Package ngs
package ngs
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ClassDescriptionRepresents an alignment between a Fragment and Reference sub-sequence provides a path to Read and mate AlignmentIterates across a list of AlignmentsA generic NGS error class Holds a message describing what happenedRepresents an NGS biological fragmentIterates across a list of FragmentsRepresents the NGS software packageRepresents a slice through a stack of Alignments at a given position on the ReferenceRepresents a single cell of a sparse 2D matrix with Reference coordinates on one axis and stacked Alignments on the other axisIterates across a list of PileupEventsIterates across a list of PileupsRepresents an NGS-capable object with a collection of Reads, References and Alignments.Represents an NGS-capable object with a group of ReadsIterates across a list of ReadGroupsRepresents a reference sequenceIterates across a list of ReferencesRepresents a reference sequence standalone objectStatistical data container