ReferenceIterator

All Superinterfaces:: Reference

public interface ReferenceIterator extends Reference

Iterates across a list of References

Method Summary

Modifier and Type

Method

Description

boolean

nextReference()

Advance to first Reference on initial invocation Advance to next Reference subsequently

Methods inherited from interface ngs.Reference
getAlignment, getAlignmentCount, getAlignmentCount, getAlignments, getAlignmentSlice, getAlignmentSlice, getCanonicalName, getCommonName, getFilteredAlignmentSlice, getFilteredPileups, getFilteredPileupSlice, getIsCircular, getIsLocal, getLength, getPileups, getPileupSlice, getPileupSlice, getReferenceBases, getReferenceBases, getReferenceChunk, getReferenceChunk

Method Details
- nextReference
  
  boolean nextReference() throws ErrorMsg
  
  Advance to first Reference on initial invocation Advance to next Reference subsequently
  
  Returns:
  
  false if no more References are available.
  
  Throws:
  
  ErrorMsg - if there is an error