All Classes and Interfaces

Class	Description
Alignment	Represents an alignment between a Fragment and Reference sub-sequence provides a path to Read and mate Alignment
AlignmentIterator	Iterates across a list of Alignments
ErrorMsg	A generic NGS error class Holds a message describing what happened
Fragment	Represents an NGS biological fragment
FragmentIterator	Iterates across a list of Fragments
LibDependencies
NGS
Package	Represents the NGS software package
Pileup	Represents a slice through a stack of Alignments at a given position on the Reference
PileupEvent	Represents a single cell of a sparse 2D matrix with Reference coordinates on one axis and stacked Alignments on the other axis
PileupEventIterator	Iterates across a list of PileupEvents
PileupIterator	Iterates across a list of Pileups
Read
ReadCollection	Represents an NGS-capable object with a collection of Reads, References and Alignments.
ReadGroup	Represents an NGS-capable object with a group of Reads
ReadGroupIterator	Iterates across a list of ReadGroups
ReadIterator
Reference	Represents a reference sequence
ReferenceIterator	Iterates across a list of References
ReferenceSequence	Represents a reference sequence standalone object
Statistics	Statistical data container