Class picard.sam.SamFormatConverterTest
|
100%
successful |
Tests
| Test | Duration | Result |
|---|---|---|
| testConvert[0](testdata/picard/sam/SamFormatConverterTest/unmapped.sam, testdata/picard/sam/SamFormatConverterTest/unmapped.bam, .bam) | 0.003s | passed |
| testConvert[1](testdata/picard/sam/SamFormatConverterTest/unmapped.sam, testdata/picard/sam/SamFormatConverterTest/unmapped.cram, .cram) | 0.026s | passed |
| testConvert[2](testdata/picard/sam/SamFormatConverterTest/unmapped.bam, testdata/picard/sam/SamFormatConverterTest/unmapped.cram, .cram) | 0.019s | passed |
| testConvert[3](testdata/picard/sam/SamFormatConverterTest/unmapped.bam, testdata/picard/sam/SamFormatConverterTest/unmapped.sam, .sam) | 0.007s | passed |
| testConvert[4](testdata/picard/sam/SamFormatConverterTest/unmapped.cram, testdata/picard/sam/SamFormatConverterTest/unmapped.bam, .bam) | 0.004s | passed |
| testConvert[5](testdata/picard/sam/SamFormatConverterTest/unmapped.cram, testdata/picard/sam/SamFormatConverterTest/unmapped.sam, .sam) | 0.003s | passed |
Standard output
No errors found No errors found No errors found No errors found No errors found No errors found
Standard error
WARNING 2025-04-24 13:04:15 ValidateSamFile NM validation cannot be performed without the reference. All other validations will still occur. WARNING 2025-04-24 13:04:15 ValidateSamFile NM validation cannot be performed without the reference. All other validations will still occur. WARNING 2025-04-24 13:04:15 ValidateSamFile NM validation cannot be performed without the reference. All other validations will still occur. WARNING 2025-04-24 13:04:15 ValidateSamFile NM validation cannot be performed without the reference. All other validations will still occur. WARNING 2025-04-24 13:04:15 ValidateSamFile NM validation cannot be performed without the reference. All other validations will still occur. WARNING 2025-04-24 13:04:15 ValidateSamFile NM validation cannot be performed without the reference. All other validations will still occur.