Standard error
[Thu Apr 24 13:04:07 EDT 2025] GatherBamFiles --INPUT /mounts/lovelace/software/picard/picard/testdata/picard/sam/GatherBamFiles/indUnknownChrom.bam --INPUT /mounts/lovelace/software/picard/picard/testdata/picard/sam/GatherBamFiles/indchr1.bam --INPUT /mounts/lovelace/software/picard/picard/testdata/picard/sam/GatherBamFiles/indchr2.bam --INPUT /mounts/lovelace/software/picard/picard/testdata/picard/sam/GatherBamFiles/indchr3.bam --INPUT /mounts/lovelace/software/picard/picard/testdata/picard/sam/GatherBamFiles/indchr4.bam --INPUT /mounts/lovelace/software/picard/picard/testdata/picard/sam/GatherBamFiles/indchr5.bam --INPUT /mounts/lovelace/software/picard/picard/testdata/picard/sam/GatherBamFiles/indchr6.bam --INPUT /mounts/lovelace/software/picard/picard/testdata/picard/sam/GatherBamFiles/indchr7.bam --INPUT /mounts/lovelace/software/picard/picard/testdata/picard/sam/GatherBamFiles/indchr8.bam --OUTPUT /tmp/gatherBamFilesTest.samFile.4631141344756479770.bam --VERBOSITY INFO --QUIET false --VALIDATION_STRINGENCY STRICT --COMPRESSION_LEVEL 5 --MAX_RECORDS_IN_RAM 100 --CREATE_INDEX false --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Thu Apr 24 13:04:07 EDT 2025] Executing as root@lovelace on Linux 6.1.0-28-amd64 amd64; OpenJDK 64-Bit Server VM 17.0.13+11-Debian-2deb12u1; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:null
INFO 2025-04-24 13:04:07 BamFileIoUtils Block copying /mounts/lovelace/software/picard/picard/testdata/picard/sam/GatherBamFiles/indUnknownChrom.bam ...
INFO 2025-04-24 13:04:07 BamFileIoUtils Block copying /mounts/lovelace/software/picard/picard/testdata/picard/sam/GatherBamFiles/indchr1.bam ...
INFO 2025-04-24 13:04:07 BamFileIoUtils Block copying /mounts/lovelace/software/picard/picard/testdata/picard/sam/GatherBamFiles/indchr2.bam ...
INFO 2025-04-24 13:04:07 BamFileIoUtils Block copying /mounts/lovelace/software/picard/picard/testdata/picard/sam/GatherBamFiles/indchr3.bam ...
INFO 2025-04-24 13:04:07 BamFileIoUtils Block copying /mounts/lovelace/software/picard/picard/testdata/picard/sam/GatherBamFiles/indchr4.bam ...
INFO 2025-04-24 13:04:07 BamFileIoUtils Block copying /mounts/lovelace/software/picard/picard/testdata/picard/sam/GatherBamFiles/indchr5.bam ...
INFO 2025-04-24 13:04:07 BamFileIoUtils Block copying /mounts/lovelace/software/picard/picard/testdata/picard/sam/GatherBamFiles/indchr6.bam ...
INFO 2025-04-24 13:04:07 BamFileIoUtils Block copying /mounts/lovelace/software/picard/picard/testdata/picard/sam/GatherBamFiles/indchr7.bam ...
INFO 2025-04-24 13:04:07 BamFileIoUtils Block copying /mounts/lovelace/software/picard/picard/testdata/picard/sam/GatherBamFiles/indchr8.bam ...
[Thu Apr 24 13:04:07 EDT 2025] picard.sam.GatherBamFiles done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1073741824
[Thu Apr 24 13:04:07 EDT 2025] GatherBamFiles --INPUT /mounts/lovelace/software/picard/picard/testdata/picard/sam/GatherBamFiles/indUnknownChrom.bam --INPUT /mounts/lovelace/software/picard/picard/testdata/picard/sam/GatherBamFiles/indchr1.bam --INPUT /mounts/lovelace/software/picard/picard/testdata/picard/sam/GatherBamFiles/indchr2.bam --INPUT /mounts/lovelace/software/picard/picard/testdata/picard/sam/GatherBamFiles/indchr3.bam --INPUT /mounts/lovelace/software/picard/picard/testdata/picard/sam/GatherBamFiles/indchr4.bam --INPUT /mounts/lovelace/software/picard/picard/testdata/picard/sam/GatherBamFiles/indchr5.bam --INPUT /mounts/lovelace/software/picard/picard/testdata/picard/sam/GatherBamFiles/indchr6.bam --INPUT /mounts/lovelace/software/picard/picard/testdata/picard/sam/GatherBamFiles/indchr7.bam --INPUT /mounts/lovelace/software/picard/picard/testdata/picard/sam/GatherBamFiles/indchr8.bam --OUTPUT /tmp/gatherBamFilesTest.samFile.1397432257194603397.bam --VERBOSITY INFO --QUIET false --VALIDATION_STRINGENCY STRICT --COMPRESSION_LEVEL 5 --MAX_RECORDS_IN_RAM 100 --CREATE_INDEX false --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Thu Apr 24 13:04:07 EDT 2025] Executing as root@lovelace on Linux 6.1.0-28-amd64 amd64; OpenJDK 64-Bit Server VM 17.0.13+11-Debian-2deb12u1; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:null
INFO 2025-04-24 13:04:07 BamFileIoUtils Block copying /mounts/lovelace/software/picard/picard/testdata/picard/sam/GatherBamFiles/indUnknownChrom.bam ...
INFO 2025-04-24 13:04:07 BamFileIoUtils Block copying /mounts/lovelace/software/picard/picard/testdata/picard/sam/GatherBamFiles/indchr1.bam ...
INFO 2025-04-24 13:04:07 BamFileIoUtils Block copying /mounts/lovelace/software/picard/picard/testdata/picard/sam/GatherBamFiles/indchr2.bam ...
INFO 2025-04-24 13:04:07 BamFileIoUtils Block copying /mounts/lovelace/software/picard/picard/testdata/picard/sam/GatherBamFiles/indchr3.bam ...
INFO 2025-04-24 13:04:07 BamFileIoUtils Block copying /mounts/lovelace/software/picard/picard/testdata/picard/sam/GatherBamFiles/indchr4.bam ...
INFO 2025-04-24 13:04:07 BamFileIoUtils Block copying /mounts/lovelace/software/picard/picard/testdata/picard/sam/GatherBamFiles/indchr5.bam ...
INFO 2025-04-24 13:04:07 BamFileIoUtils Block copying /mounts/lovelace/software/picard/picard/testdata/picard/sam/GatherBamFiles/indchr6.bam ...
INFO 2025-04-24 13:04:07 BamFileIoUtils Block copying /mounts/lovelace/software/picard/picard/testdata/picard/sam/GatherBamFiles/indchr7.bam ...
INFO 2025-04-24 13:04:07 BamFileIoUtils Block copying /mounts/lovelace/software/picard/picard/testdata/picard/sam/GatherBamFiles/indchr8.bam ...
[Thu Apr 24 13:04:07 EDT 2025] picard.sam.GatherBamFiles done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1073741824