Class picard.sam.DuplicationMetricsTest

all > picard.sam > DuplicationMetricsTest
7

tests
0

failures
0

ignored
0.003s

duration
100%

successful

Tests

Test Duration Result
infiniteLoopFromGithub_1146 0.003s passed
testEmptyDuplicationMetricsDerivation 0s passed
testMerge[0](LIBRARY LIBRARY UNPAIRED_READS_EXAMINED 0 READ_PAIRS_EXAMINED 0 SECONDARY_OR_SUPPLEMENTARY_RDS 0 UNMAPPED_READS 0 UNPAIRED_READ_DUPLICATES 0 READ_PAIR_DUPLICATES 0 READ_PAIR_OPTICAL_DUPLICATES 0 PERCENT_DUPLICATION 0 ESTIMATED_LIBRARY_SIZE , LIBRARY LIBRARY UNPAIRED_READS_EXAMINED 0 READ_PAIRS_EXAMINED 0 SECONDARY_OR_SUPPLEMENTARY_RDS 0 UNMAPPED_READS 0 UNPAIRED_READ_DUPLICATES 0 READ_PAIR_DUPLICATES 0 READ_PAIR_OPTICAL_DUPLICATES 0 PERCENT_DUPLICATION 0 ESTIMATED_LIBRARY_SIZE , LIBRARY LIBRARY UNPAIRED_READS_EXAMINED 0 READ_PAIRS_EXAMINED 0 SECONDARY_OR_SUPPLEMENTARY_RDS 0 UNMAPPED_READS 0 UNPAIRED_READ_DUPLICATES 0 READ_PAIR_DUPLICATES 0 READ_PAIR_OPTICAL_DUPLICATES 0 PERCENT_DUPLICATION 0 ESTIMATED_LIBRARY_SIZE ) 0s passed
testMerge[1](LIBRARY LIBRARY UNPAIRED_READS_EXAMINED 0 READ_PAIRS_EXAMINED 0 SECONDARY_OR_SUPPLEMENTARY_RDS 0 UNMAPPED_READS 0 UNPAIRED_READ_DUPLICATES 0 READ_PAIR_DUPLICATES 0 READ_PAIR_OPTICAL_DUPLICATES 0 PERCENT_DUPLICATION 0 ESTIMATED_LIBRARY_SIZE , LIBRARY LIBRARY UNPAIRED_READS_EXAMINED 1000 READ_PAIRS_EXAMINED 1000 SECONDARY_OR_SUPPLEMENTARY_RDS 1 UNMAPPED_READS 10 UNPAIRED_READ_DUPLICATES 100 READ_PAIR_DUPLICATES 110 READ_PAIR_OPTICAL_DUPLICATES 10 PERCENT_DUPLICATION 0.106667 ESTIMATED_LIBRARY_SIZE 4564 , LIBRARY LIBRARY UNPAIRED_READS_EXAMINED 1000 READ_PAIRS_EXAMINED 1000 SECONDARY_OR_SUPPLEMENTARY_RDS 1 UNMAPPED_READS 10 UNPAIRED_READ_DUPLICATES 100 READ_PAIR_DUPLICATES 110 READ_PAIR_OPTICAL_DUPLICATES 10 PERCENT_DUPLICATION 0.106667 ESTIMATED_LIBRARY_SIZE 4564 ) 0s passed
testMerge[2](LIBRARY LIBRARY UNPAIRED_READS_EXAMINED 1000 READ_PAIRS_EXAMINED 1000 SECONDARY_OR_SUPPLEMENTARY_RDS 1 UNMAPPED_READS 10 UNPAIRED_READ_DUPLICATES 100 READ_PAIR_DUPLICATES 110 READ_PAIR_OPTICAL_DUPLICATES 10 PERCENT_DUPLICATION 0.106667 ESTIMATED_LIBRARY_SIZE 4564 , LIBRARY LIBRARY UNPAIRED_READS_EXAMINED 0 READ_PAIRS_EXAMINED 0 SECONDARY_OR_SUPPLEMENTARY_RDS 0 UNMAPPED_READS 0 UNPAIRED_READ_DUPLICATES 0 READ_PAIR_DUPLICATES 0 READ_PAIR_OPTICAL_DUPLICATES 0 PERCENT_DUPLICATION 0 ESTIMATED_LIBRARY_SIZE , LIBRARY LIBRARY UNPAIRED_READS_EXAMINED 1000 READ_PAIRS_EXAMINED 1000 SECONDARY_OR_SUPPLEMENTARY_RDS 1 UNMAPPED_READS 10 UNPAIRED_READ_DUPLICATES 100 READ_PAIR_DUPLICATES 110 READ_PAIR_OPTICAL_DUPLICATES 10 PERCENT_DUPLICATION 0.106667 ESTIMATED_LIBRARY_SIZE 4564 ) 0s passed
testMerge[3](LIBRARY LIBRARY UNPAIRED_READS_EXAMINED 1000 READ_PAIRS_EXAMINED 1000 SECONDARY_OR_SUPPLEMENTARY_RDS 1 UNMAPPED_READS 10 UNPAIRED_READ_DUPLICATES 100 READ_PAIR_DUPLICATES 110 READ_PAIR_OPTICAL_DUPLICATES 10 PERCENT_DUPLICATION 0.106667 ESTIMATED_LIBRARY_SIZE 4564 , LIBRARY LIBRARY UNPAIRED_READS_EXAMINED 1000 READ_PAIRS_EXAMINED 1000 SECONDARY_OR_SUPPLEMENTARY_RDS 1 UNMAPPED_READS 10 UNPAIRED_READ_DUPLICATES 100 READ_PAIR_DUPLICATES 110 READ_PAIR_OPTICAL_DUPLICATES 10 PERCENT_DUPLICATION 0.106667 ESTIMATED_LIBRARY_SIZE 4564 , LIBRARY LIBRARY UNPAIRED_READS_EXAMINED 2000 READ_PAIRS_EXAMINED 2000 SECONDARY_OR_SUPPLEMENTARY_RDS 2 UNMAPPED_READS 20 UNPAIRED_READ_DUPLICATES 200 READ_PAIR_DUPLICATES 220 READ_PAIR_OPTICAL_DUPLICATES 20 PERCENT_DUPLICATION 0.106667 ESTIMATED_LIBRARY_SIZE 9129 ) 0s passed
testMerge[4](LIBRARY LIBRARY UNPAIRED_READS_EXAMINED 1000 READ_PAIRS_EXAMINED 1000 SECONDARY_OR_SUPPLEMENTARY_RDS 1 UNMAPPED_READS 10 UNPAIRED_READ_DUPLICATES 100 READ_PAIR_DUPLICATES 110 READ_PAIR_OPTICAL_DUPLICATES 10 PERCENT_DUPLICATION 0.106667 ESTIMATED_LIBRARY_SIZE 4564 , LIBRARY LIBRARY UNPAIRED_READS_EXAMINED 2000 READ_PAIRS_EXAMINED 2000 SECONDARY_OR_SUPPLEMENTARY_RDS 2 UNMAPPED_READS 20 UNPAIRED_READ_DUPLICATES 200 READ_PAIR_DUPLICATES 220 READ_PAIR_OPTICAL_DUPLICATES 20 PERCENT_DUPLICATION 0.106667 ESTIMATED_LIBRARY_SIZE 9129 , LIBRARY LIBRARY UNPAIRED_READS_EXAMINED 3000 READ_PAIRS_EXAMINED 3000 SECONDARY_OR_SUPPLEMENTARY_RDS 3 UNMAPPED_READS 30 UNPAIRED_READ_DUPLICATES 300 READ_PAIR_DUPLICATES 330 READ_PAIR_OPTICAL_DUPLICATES 30 PERCENT_DUPLICATION 0.106667 ESTIMATED_LIBRARY_SIZE 13693 ) 0s passed