#!/bin/env bash

for confidence in 03 05 07; do 

	kraken2 --db /mounts/tmpfs/kraken2-core_nt --output - --threads 16 --classified-out S1-classified-$confidence.out --unclassified-out S1-unclassified-$confidence.out --memory-mapping --confidence 0.$confidence --report-zero-counts  --report S1-report-$confidence.out --use-names 2026-06-09-2024-EC-stations-1-5.fastq; 

done