#!/bin/env bash

#  barcode02 barcode03

for barcode in barcode01 barcode02 barcode03 barcode04 barcode05 barcode06 barcode07 barcode08 barcode09 barcode10 barcode11 barcode12 barcode13 barcode14 barcode15 barcode16 barcode17 barcode18 barcode19 barcode20 barcode22 barcode23 barcode24 unclassified; do 
	echo "barcode = " $barcode
	find . -maxdepth 1 -name "*$barcode*.fastq" -print0 | sort -V -z | while IFS= read -r -d '' file; do
    	echo "$file"
    	echo "entry " $file >> count-$barcode.out
    	cat $file >> $barcode.fastq-new
	done
	echo "* * * * * * * * * * * * * * * * *"; 
done