nohup samtools view -h 1-byname.bam | python ../filter-BAM-SOI-all-alignments.py /mounts/lovelace/temporary/SoI-for-workflow.csv | samtools view -b -o 1-filtered-SOI-all-alignments.bam &

nohup samtools view -h 2-byname.bam | python ../filter-BAM-SOI-all-alignments.py /mounts/lovelace/temporary/SoI-for-workflow.csv | samtools view -b -o 2-filtered-SOI-all-alignments.bam &

nohup samtools view -h 3-byname.bam | python ../filter-BAM-SOI-all-alignments.py /mounts/lovelace/temporary/SoI-for-workflow.csv | samtools view -b -o 3-filtered-SOI-all-alignments.bam &

nohup samtools view -h 4-byname.bam | python ../filter-BAM-SOI-all-alignments.py /mounts/lovelace/temporary/SoI-for-workflow.csv | samtools view -b -o 4-filtered-SOI-all-alignments.bam &

nohup samtools view -h 5-byname.bam | python ../filter-BAM-SOI-all-alignments.py /mounts/lovelace/temporary/SoI-for-workflow.csv | samtools view -b -o 5-filtered-SOI-all-alignments.bam &

nohup samtools view -h 7-byname.bam | python ../filter-BAM-SOI-all-alignments.py /mounts/lovelace/temporary/SoI-for-workflow.csv | samtools view -b -o 7-filtered-SOI-all-alignments.bam &

nohup samtools view -h 8-byname.bam | python ../filter-BAM-SOI-all-alignments.py /mounts/lovelace/temporary/SoI-for-workflow.csv | samtools view -b -o 8-filtered-SOI-all-alignments.bam &