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| Name | Last modified | Size | Description |
|---|---|---|---|---|
| Parent Directory | - | ||
| annot-tsv/ | 2024-04-15 10:09 | - | |
| auxf#values.sam | 2016-06-17 06:40 | 751 | |
| auxf#values_java.cram | 2016-10-20 09:38 | 5.0K | |
| auxf.fa | 2014-12-20 09:53 | 29 | |
| auxf.fa.fai | 2014-12-20 09:53 | 18 | |
| base_mods/ | 2024-04-15 10:09 | - | |
| bcf-sr/ | 2024-04-15 10:09 | - | |
| bgziptest.txt | 2016-09-01 09:22 | 15 | |
| bgziptest.txt.gz | 2016-09-01 09:22 | 181 | |
| bgziptest.txt.gz.gzi | 2016-09-01 09:22 | 88 | |
| c1#bounds.sam | 2013-09-20 04:58 | 148 | |
| c1#clip.sam | 2013-07-22 07:08 | 337 | |
| c1#noseq.sam | 2015-04-08 11:41 | 433 | |
| c1#pad1.sam | 2013-07-22 07:08 | 388 | |
| c1#pad2.sam | 2015-02-18 05:27 | 527 | |
| c1#pad3.sam | 2015-02-18 05:27 | 665 | |
| c1#unknown.sam | 2015-03-10 11:05 | 429 | |
| c1.fa | 2013-07-22 07:08 | 15 | |
| c1.fa.fai | 2013-07-22 07:08 | 14 | |
| c2#pad.sam | 2015-04-29 09:55 | 847 | |
| c2.fa | 2015-04-29 10:19 | 14 | |
| c2.fa.fai | 2015-04-29 10:24 | 12 | |
| ce#1.sam | 2015-02-18 05:27 | 341 | |
| ce#2.sam | 2015-02-18 05:27 | 645 | |
| ce#5.sam | 2015-02-18 05:27 | 1.8K | |
| ce#5b.sam | 2015-02-18 05:27 | 1.8K | |
| ce#5b_java.cram | 2016-03-18 10:17 | 6.6K | |
| ce#1000.sam | 2018-03-09 06:50 | 315K | |
| ce#large_seq.sam | 2015-02-18 05:27 | 2.0M | |
| ce#supp.sam | 2015-04-08 12:32 | 547 | |
| ce#tag_depadded.sam | 2015-02-18 05:27 | 1.6K | |
| ce#tag_padded.sam | 2015-02-18 05:27 | 1.6K | |
| ce#unmap.sam | 2013-07-22 07:08 | 1.3K | |
| ce#unmap1.sam | 2015-02-18 05:27 | 2.7K | |
| ce#unmap2.sam | 2015-02-18 05:27 | 5.4K | |
| ce.fa | 2013-07-22 07:08 | 1.0M | |
| ce.fa.fai | 2013-07-22 07:08 | 230 | |
| colons.bam | 2018-06-07 06:50 | 268 | |
| colons.bam.bai | 2018-06-07 06:50 | 424 | |
| compare_sam.pl | 2023-05-31 09:48 | 6.3K | |
| cross_validate.sh | 2019-11-19 06:20 | 4.2K | |
| emptyfile | 2019-08-28 10:58 | 0 | |
| faidx/ | 2024-04-15 10:09 | - | |
| fastq/ | 2024-04-15 10:09 | - | |
| fastqs_README.txt | 2018-05-21 10:09 | 4.8K | |
| fieldarith.c | 2020-01-07 10:32 | 2.4K | |
| fieldarith.sam | 2020-05-18 10:27 | 910 | |
| formatcols.vcf | 2021-02-16 11:49 | 241 | |
| formatmissing-out.vcf | 2016-09-09 05:11 | 226 | |
| formatmissing.vcf | 2016-09-09 05:11 | 226 | |
| fuzz/ | 2024-04-15 10:09 | - | |
| header_syms.pl | 2021-01-07 04:37 | 3.5K | |
| hfile.c | 2023-03-29 12:35 | 12K | |
| hts_endian.c | 2020-01-07 10:32 | 17K | |
| index.bam.bai | 2019-01-30 09:48 | 776 | |
| index.bam.csi | 2019-01-30 09:48 | 130 | |
| index.bcf.csi | 2024-02-07 07:36 | 144 | |
| index.cram.crai | 2019-01-30 09:48 | 83 | |
| index.sam | 2019-01-30 09:48 | 53K | |
| index.sam.gz.bai | 2019-01-30 09:48 | 776 | |
| index.sam.gz.csi | 2019-01-30 09:48 | 130 | |
| index.vcf | 2018-06-20 09:11 | 67K | |
| index.vcf.gz.csi | 2022-01-20 11:28 | 168 | |
| index.vcf.gz.tbi | 2022-01-20 11:28 | 206 | |
| index2.sam | 2021-11-03 10:46 | 477 | |
| index_dos.sam | 2020-10-07 08:00 | 53K | |
| longrefs/ | 2024-04-15 10:09 | - | |
| maintainer/ | 2024-04-15 10:09 | - | |
| md#1.sam | 2016-05-20 09:59 | 1.0K | |
| md.fa | 2016-05-20 09:59 | 45 | |
| md.fa.fai | 2016-05-20 09:59 | 13 | |
| modhdr.expected.vcf | 2023-01-06 11:58 | 148 | |
| modhdr.vcf.gz | 2023-01-06 11:58 | 156 | |
| modhdr.vcf.gz.csi | 2023-01-06 11:58 | 86 | |
| mpileup/ | 2024-04-15 10:09 | - | |
| no_hdr_sq_1.bam | 2019-07-04 11:43 | 1.7K | |
| no_hdr_sq_1.bam.csi | 2019-07-04 11:43 | 94 | |
| no_hdr_sq_1.expected.sam | 2019-07-04 11:43 | 2.0K | |
| noroundtrip-out.vcf | 2024-03-20 06:11 | 404 | |
| noroundtrip.vcf | 2024-03-20 06:11 | 367 | |
| pileup.c | 2024-04-05 05:17 | 7.3K | |
| pileup_mod.c | 2024-02-19 12:12 | 7.0K | |
| plugins-dlhts.c | 2020-11-05 06:26 | 5.0K | |
| range.bam | 2018-01-31 07:22 | 13K | |
| range.bam.bai | 2018-01-31 07:22 | 360 | |
| range.cram | 2018-01-31 07:22 | 11K | |
| range.cram.crai | 2018-01-31 07:22 | 94 | |
| range.out | 2018-01-31 07:22 | 3.4K | |
| realn01.fa | 2018-02-09 05:23 | 719 | |
| realn01.fa.fai | 2018-02-09 05:23 | 21 | |
| realn01.sam | 2018-02-09 05:23 | 1.8K | |
| realn01_exp-a.sam | 2018-02-09 05:23 | 2.1K | |
| realn01_exp-e.sam | 2018-02-09 05:23 | 2.1K | |
| realn01_exp.sam | 2018-02-09 05:23 | 2.1K | |
| realn02-r.sam | 2018-02-09 05:23 | 3.7K | |
| realn02.fa | 2018-02-09 05:23 | 4.2K | |
| realn02.fa.fai | 2018-02-09 05:23 | 17 | |
| realn02.sam | 2018-02-09 05:23 | 2.8K | |
| realn02_exp-a.sam | 2018-02-09 05:23 | 3.7K | |
| realn02_exp-e.sam | 2018-02-09 05:23 | 3.7K | |
| realn02_exp.sam | 2018-02-09 05:23 | 3.7K | |
| realn03.fa | 2023-05-23 10:36 | 16 | |
| realn03.fa.fai | 2023-05-23 10:36 | 14 | |
| realn03.sam | 2023-05-23 10:36 | 138 | |
| realn03_exp.sam | 2023-05-23 10:36 | 172 | |
| sam.c | 2024-04-05 05:17 | 83K | |
| sam_filter/ | 2024-04-15 10:09 | - | |
| simple_test_driver.sh | 2023-07-14 04:06 | 5.6K | |
| tabix.out | 2019-04-18 11:36 | 98 | |
| tabix/ | 2024-04-15 10:09 | - | |
| test-bcf-sr.c | 2023-07-20 11:01 | 9.3K | |
| test-bcf-sr.pl | 2023-07-20 11:01 | 17K | |
| test-bcf-translate.c | 2020-09-16 05:17 | 8.8K | |
| test-bcf-translate.out | 2017-08-29 05:56 | 869 | |
| test-bcf_set_variant_type.c | 2022-07-05 12:09 | 3.9K | |
| test-logging.pl | 2022-04-27 06:39 | 2.5K | |
| test-parse-reg.c | 2020-01-07 10:32 | 6.9K | |
| test-regidx.c | 2023-07-20 11:01 | 17K | |
| test-vcf-api.c | 2023-07-20 11:01 | 25K | |
| test-vcf-api.out | 2019-04-10 07:40 | 2.0K | |
| test-vcf-hdr-in.vcf | 2016-03-24 07:32 | 2.0K | |
| test-vcf-hdr.out | 2016-03-24 07:32 | 1.3K | |
| test-vcf-sweep.c | 2021-01-29 13:34 | 3.8K | |
| test-vcf-sweep.out | 2013-09-05 05:41 | 92 | |
| test.pl | 2024-02-13 06:54 | 55K | |
| test_bgzf.c | 2023-07-20 11:01 | 35K | |
| test_expr.c | 2022-07-14 05:33 | 12K | |
| test_faidx.c | 2022-11-02 11:57 | 16K | |
| test_index.c | 2020-10-23 10:06 | 2.8K | |
| test_introspection.c | 2021-06-22 06:24 | 3.2K | |
| test_kfunc.c | 2020-08-17 12:18 | 3.6K | |
| test_kstring.c | 2020-09-29 14:50 | 12K | |
| test_mod.c | 2024-02-19 12:12 | 7.4K | |
| test_realn.c | 2020-09-25 12:16 | 4.9K | |
| test_str2int.c | 2020-09-25 12:16 | 8.7K | |
| test_time_funcs.c | 2022-08-16 13:05 | 4.5K | |
| test_view.c | 2023-08-25 18:09 | 15K | |
| thrash_threads1.c | 2020-01-07 10:32 | 1.6K | |
| thrash_threads2.c | 2020-01-07 10:32 | 1.6K | |
| thrash_threads3.c | 2020-01-07 10:32 | 1.7K | |
| thrash_threads4.c | 2020-01-07 10:32 | 2.2K | |
| thrash_threads5.c | 2020-01-07 10:32 | 2.1K | |
| thrash_threads6.c | 2020-01-07 10:32 | 3.3K | |
| thrash_threads7.c | 2020-01-07 10:32 | 3.6K | |
| thread_pool.md | 2017-03-03 14:48 | 2.9K | |
| usepublic.cpp | 2023-10-03 15:09 | 2.4K | |
| vcf_meta_meta.vcf | 2021-04-09 12:58 | 427 | |
| with-shlib.sh | 2020-05-16 04:01 | 2.1K | |
| xx#MD.sam | 2018-11-07 06:03 | 1.0K | |
| xx#MD2.sam | 2018-11-07 06:03 | 1.1K | |
| xx#blank.sam | 2019-08-28 10:58 | 71 | |
| xx#large_aux.sam | 2013-07-22 07:08 | 884K | |
| xx#large_aux2.sam | 2013-07-22 07:08 | 651 | |
| xx#large_aux_java.cram | 2016-03-18 10:17 | 22K | |
| xx#minimal.sam | 2013-07-22 07:08 | 254 | |
| xx#pair.sam | 2013-07-22 07:08 | 304 | |
| xx#repeated.sam | 2016-01-14 07:15 | 298 | |
| xx#rg.sam | 2013-07-22 07:08 | 517 | |
| xx#tlen.sam | 2015-04-29 09:55 | 1.0K | |
| xx#tlen2.sam | 2015-04-29 09:55 | 1.1K | |
| xx#triplet.sam | 2013-07-22 07:08 | 267 | |
| xx#unsorted.sam | 2013-07-22 07:08 | 320 | |
| xx.fa | 2018-11-07 06:03 | 86 | |
| xx.fa.fai | 2018-11-07 06:03 | 44 | |