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| Name | Last modified | Size | Description |
|---|---|---|---|---|
| Parent Directory | - | ||
| annot-tsv/ | 2023-12-04 11:03 | - | |
| auxf#values.sam | 2023-12-04 11:03 | 751 | |
| auxf#values_java.cram | 2023-12-04 11:03 | 5.0K | |
| auxf.fa | 2023-12-04 11:03 | 29 | |
| auxf.fa.fai | 2023-12-04 11:03 | 18 | |
| base_mods/ | 2023-12-04 11:03 | - | |
| bcf-sr/ | 2023-12-04 11:03 | - | |
| bgziptest.txt | 2023-12-04 11:03 | 15 | |
| bgziptest.txt.gz | 2023-12-04 11:03 | 181 | |
| bgziptest.txt.gz.gzi | 2023-12-04 11:03 | 88 | |
| c1#bounds.sam | 2023-12-04 11:03 | 148 | |
| c1#clip.sam | 2023-12-04 11:03 | 337 | |
| c1#noseq.sam | 2023-12-04 11:03 | 433 | |
| c1#pad1.sam | 2023-12-04 11:03 | 388 | |
| c1#pad2.sam | 2023-12-04 11:03 | 527 | |
| c1#pad3.sam | 2023-12-04 11:03 | 665 | |
| c1#unknown.sam | 2023-12-04 11:03 | 429 | |
| c1.fa | 2023-12-04 11:03 | 15 | |
| c1.fa.fai | 2023-12-04 11:03 | 14 | |
| c2#pad.sam | 2023-12-04 11:03 | 847 | |
| c2.fa | 2023-12-04 11:03 | 14 | |
| c2.fa.fai | 2023-12-04 11:03 | 12 | |
| ce#1.sam | 2023-12-04 11:03 | 341 | |
| ce#2.sam | 2023-12-04 11:03 | 645 | |
| ce#5.sam | 2023-12-04 11:03 | 1.8K | |
| ce#5b.sam | 2023-12-04 11:03 | 1.8K | |
| ce#5b_java.cram | 2023-12-04 11:03 | 6.6K | |
| ce#1000.sam | 2023-12-04 11:03 | 315K | |
| ce#large_seq.sam | 2023-12-04 11:03 | 2.0M | |
| ce#supp.sam | 2023-12-04 11:03 | 547 | |
| ce#tag_depadded.sam | 2023-12-04 11:03 | 1.6K | |
| ce#tag_padded.sam | 2023-12-04 11:03 | 1.6K | |
| ce#unmap.sam | 2023-12-04 11:03 | 1.3K | |
| ce#unmap1.sam | 2023-12-04 11:03 | 2.7K | |
| ce#unmap2.sam | 2023-12-04 11:03 | 5.4K | |
| ce.fa | 2023-12-04 11:03 | 1.0M | |
| ce.fa.fai | 2023-12-04 11:03 | 230 | |
| colons.bam | 2023-12-04 11:03 | 268 | |
| colons.bam.bai | 2023-12-04 11:03 | 424 | |
| compare_sam.pl | 2023-12-04 11:03 | 6.3K | |
| cross_validate.sh | 2023-12-04 11:03 | 4.2K | |
| emptyfile | 2023-12-04 11:03 | 0 | |
| faidx/ | 2023-12-04 11:03 | - | |
| fastq/ | 2023-12-04 11:03 | - | |
| fastqs_README.txt | 2023-12-04 11:03 | 4.8K | |
| fieldarith | 2023-12-04 11:07 | 3.3M | |
| fieldarith.c | 2023-12-04 11:03 | 2.4K | |
| fieldarith.o | 2023-12-04 11:07 | 19K | |
| fieldarith.sam | 2023-12-04 11:03 | 910 | |
| formatcols.vcf | 2023-12-04 11:03 | 241 | |
| formatmissing-out.vcf | 2023-12-04 11:03 | 226 | |
| formatmissing.vcf | 2023-12-04 11:03 | 226 | |
| fuzz/ | 2023-12-04 11:08 | - | |
| header_syms.pl | 2023-12-04 11:03 | 3.5K | |
| hfile | 2023-12-04 11:07 | 3.3M | |
| hfile.c | 2023-12-04 11:03 | 12K | |
| hfile.o | 2023-12-04 11:07 | 76K | |
| hts_endian | 2023-12-04 11:07 | 48K | |
| hts_endian.c | 2023-12-04 11:03 | 17K | |
| hts_endian.o | 2023-12-04 11:07 | 72K | |
| index.bam.bai | 2023-12-04 11:03 | 776 | |
| index.bam.csi | 2023-12-04 11:03 | 130 | |
| index.bcf.csi | 2023-12-04 11:03 | 144 | |
| index.cram.crai | 2023-12-04 11:03 | 83 | |
| index.sam | 2023-12-04 11:03 | 53K | |
| index.sam.gz.bai | 2023-12-04 11:03 | 776 | |
| index.sam.gz.csi | 2023-12-04 11:03 | 130 | |
| index.vcf | 2023-12-04 11:03 | 67K | |
| index.vcf.gz.csi | 2023-12-04 11:03 | 168 | |
| index.vcf.gz.tbi | 2023-12-04 11:03 | 206 | |
| index2.sam | 2023-12-04 11:03 | 477 | |
| index_dos.sam | 2023-12-04 11:03 | 53K | |
| longrefs/ | 2023-12-04 11:03 | - | |
| maintainer/ | 2023-12-04 11:03 | - | |
| md#1.sam | 2023-12-04 11:03 | 1.0K | |
| md.fa | 2023-12-04 11:03 | 45 | |
| md.fa.fai | 2023-12-04 11:03 | 13 | |
| modhdr.expected.vcf | 2023-12-04 11:03 | 148 | |
| modhdr.vcf.gz | 2023-12-04 11:03 | 156 | |
| modhdr.vcf.gz.csi | 2023-12-04 11:03 | 86 | |
| mpileup/ | 2023-12-04 11:03 | - | |
| no_hdr_sq_1.bam | 2023-12-04 11:03 | 1.7K | |
| no_hdr_sq_1.bam.csi | 2023-12-04 11:03 | 94 | |
| no_hdr_sq_1.expected.sam | 2023-12-04 11:03 | 2.0K | |
| noroundtrip-out.vcf | 2023-12-04 11:03 | 325 | |
| noroundtrip.vcf | 2023-12-04 11:03 | 271 | |
| pileup | 2023-12-04 11:07 | 3.3M | |
| pileup.c | 2023-12-04 11:03 | 6.8K | |
| pileup.o | 2023-12-04 11:07 | 33K | |
| pileup_mod | 2023-12-04 11:07 | 3.3M | |
| pileup_mod.c | 2023-12-04 11:03 | 7.0K | |
| pileup_mod.o | 2023-12-04 11:07 | 40K | |
| plugins-dlhts | 2023-12-04 11:07 | 17K | |
| plugins-dlhts.c | 2023-12-04 11:03 | 5.0K | |
| plugins-dlhts.o | 2023-12-04 11:07 | 4.0K | |
| range.bam | 2023-12-04 11:03 | 13K | |
| range.bam.bai | 2023-12-04 11:03 | 360 | |
| range.cram | 2023-12-04 11:03 | 11K | |
| range.cram.crai | 2023-12-04 11:03 | 94 | |
| range.out | 2023-12-04 11:03 | 3.4K | |
| realn01.fa | 2023-12-04 11:03 | 719 | |
| realn01.fa.fai | 2023-12-04 11:03 | 21 | |
| realn01.sam | 2023-12-04 11:03 | 1.8K | |
| realn01_exp-a.sam | 2023-12-04 11:03 | 2.1K | |
| realn01_exp-e.sam | 2023-12-04 11:03 | 2.1K | |
| realn01_exp.sam | 2023-12-04 11:03 | 2.1K | |
| realn02-r.sam | 2023-12-04 11:03 | 3.7K | |
| realn02.fa | 2023-12-04 11:03 | 4.2K | |
| realn02.fa.fai | 2023-12-04 11:03 | 17 | |
| realn02.sam | 2023-12-04 11:03 | 2.8K | |
| realn02_exp-a.sam | 2023-12-04 11:03 | 3.7K | |
| realn02_exp-e.sam | 2023-12-04 11:03 | 3.7K | |
| realn02_exp.sam | 2023-12-04 11:03 | 3.7K | |
| realn03.fa | 2023-12-04 11:03 | 16 | |
| realn03.fa.fai | 2023-12-04 11:03 | 14 | |
| realn03.sam | 2023-12-04 11:03 | 138 | |
| realn03_exp.sam | 2023-12-04 11:03 | 172 | |
| sam | 2023-12-04 11:07 | 3.4M | |
| sam.c | 2023-12-04 11:03 | 83K | |
| sam.o | 2023-12-04 11:07 | 292K | |
| sam_filter/ | 2023-12-04 11:03 | - | |
| simple_test_driver.sh | 2023-12-04 11:03 | 5.6K | |
| tabix.out | 2023-12-04 11:03 | 98 | |
| tabix/ | 2023-12-04 11:03 | - | |
| test-bcf-sr | 2023-12-04 11:08 | 4.0M | |
| test-bcf-sr.c | 2023-12-04 11:03 | 9.3K | |
| test-bcf-sr.o | 2023-12-04 11:08 | 52K | |
| test-bcf-sr.pl | 2023-12-04 11:03 | 17K | |
| test-bcf-translate | 2023-12-04 11:08 | 3.8M | |
| test-bcf-translate.c | 2023-12-04 11:03 | 8.8K | |
| test-bcf-translate.o | 2023-12-04 11:08 | 30K | |
| test-bcf-translate.out | 2023-12-04 11:03 | 869 | |
| test-bcf_set_variant_type | 2023-12-04 11:08 | 3.8M | |
| test-bcf_set_variant_type.c | 2023-12-04 11:03 | 3.9K | |
| test-bcf_set_variant_type.o | 2023-12-04 11:08 | 1.0M | |
| test-logging.pl | 2023-12-04 11:03 | 2.5K | |
| test-parse-reg | 2023-12-04 11:08 | 3.3M | |
| test-parse-reg.c | 2023-12-04 11:03 | 6.9K | |
| test-parse-reg.o | 2023-12-04 11:08 | 29K | |
| test-regidx | 2023-12-04 11:08 | 3.3M | |
| test-regidx.c | 2023-12-04 11:03 | 17K | |
| test-regidx.o | 2023-12-04 11:08 | 69K | |
| test-vcf-api | 2023-12-04 11:08 | 3.9M | |
| test-vcf-api.c | 2023-12-04 11:03 | 25K | |
| test-vcf-api.o | 2023-12-04 11:08 | 124K | |
| test-vcf-api.out | 2023-12-04 11:03 | 2.0K | |
| test-vcf-hdr-in.vcf | 2023-12-04 11:03 | 2.0K | |
| test-vcf-hdr.out | 2023-12-04 11:03 | 1.3K | |
| test-vcf-sweep | 2023-12-04 11:08 | 3.8M | |
| test-vcf-sweep.c | 2023-12-04 11:03 | 3.8K | |
| test-vcf-sweep.o | 2023-12-04 11:08 | 17K | |
| test-vcf-sweep.out | 2023-12-04 11:03 | 92 | |
| test.pl | 2023-12-04 11:03 | 54K | |
| test_bgzf | 2023-12-04 11:08 | 3.3M | |
| test_bgzf.c | 2023-12-04 11:03 | 35K | |
| test_bgzf.o | 2023-12-04 11:08 | 130K | |
| test_expr | 2023-12-04 11:08 | 3.3M | |
| test_expr.c | 2023-12-04 11:03 | 12K | |
| test_expr.o | 2023-12-04 11:08 | 39K | |
| test_faidx | 2023-12-04 11:08 | 3.3M | |
| test_faidx.c | 2023-12-04 11:03 | 16K | |
| test_faidx.o | 2023-12-04 11:08 | 55K | |
| test_index | 2023-12-04 11:08 | 3.8M | |
| test_index.c | 2023-12-04 11:03 | 2.8K | |
| test_index.o | 2023-12-04 11:08 | 18K | |
| test_introspection | 2023-12-04 11:08 | 3.3M | |
| test_introspection.c | 2023-12-04 11:03 | 3.2K | |
| test_introspection.o | 2023-12-04 11:08 | 12K | |
| test_kfunc | 2023-12-04 11:08 | 39K | |
| test_kfunc.c | 2023-12-04 11:03 | 3.6K | |
| test_kfunc.o | 2023-12-04 11:08 | 23K | |
| test_kstring | 2023-12-04 11:08 | 62K | |
| test_kstring.c | 2023-12-04 11:03 | 12K | |
| test_kstring.o | 2023-12-04 11:08 | 50K | |
| test_mod | 2023-12-04 11:08 | 3.3M | |
| test_mod.c | 2023-12-04 11:03 | 7.4K | |
| test_mod.o | 2023-12-04 11:08 | 30K | |
| test_realn | 2023-12-04 11:08 | 3.3M | |
| test_realn.c | 2023-12-04 11:03 | 4.9K | |
| test_realn.o | 2023-12-04 11:08 | 28K | |
| test_str2int | 2023-12-04 11:08 | 3.3M | |
| test_str2int.c | 2023-12-04 11:03 | 8.7K | |
| test_str2int.o | 2023-12-04 11:08 | 52K | |
| test_time_funcs | 2023-12-04 11:08 | 27K | |
| test_time_funcs.c | 2023-12-04 11:03 | 4.5K | |
| test_time_funcs.o | 2023-12-04 11:08 | 28K | |
| test_view | 2023-12-04 11:08 | 3.8M | |
| test_view.c | 2023-12-04 11:03 | 15K | |
| test_view.o | 2023-12-04 11:08 | 99K | |
| thrash_threads1.c | 2023-12-04 11:03 | 1.6K | |
| thrash_threads2.c | 2023-12-04 11:03 | 1.6K | |
| thrash_threads3.c | 2023-12-04 11:03 | 1.7K | |
| thrash_threads4.c | 2023-12-04 11:03 | 2.2K | |
| thrash_threads5.c | 2023-12-04 11:03 | 2.1K | |
| thrash_threads6.c | 2023-12-04 11:03 | 3.3K | |
| thrash_threads7.c | 2023-12-04 11:03 | 3.6K | |
| thread_pool.md | 2023-12-04 11:03 | 2.9K | |
| usepublic.cpp | 2023-12-04 11:03 | 2.4K | |
| vcf_meta_meta.vcf | 2023-12-04 11:03 | 427 | |
| with-shlib.sh | 2023-12-04 11:03 | 2.1K | |
| xx#MD.sam | 2023-12-04 11:03 | 1.0K | |
| xx#MD2.sam | 2023-12-04 11:03 | 1.1K | |
| xx#blank.sam | 2023-12-04 11:03 | 71 | |
| xx#large_aux.sam | 2023-12-04 11:03 | 884K | |
| xx#large_aux2.sam | 2023-12-04 11:03 | 651 | |
| xx#large_aux_java.cram | 2023-12-04 11:03 | 22K | |
| xx#minimal.sam | 2023-12-04 11:03 | 254 | |
| xx#pair.sam | 2023-12-04 11:03 | 304 | |
| xx#repeated.sam | 2023-12-04 11:03 | 298 | |
| xx#rg.sam | 2023-12-04 11:03 | 517 | |
| xx#tlen.sam | 2023-12-04 11:03 | 1.0K | |
| xx#tlen2.sam | 2023-12-04 11:03 | 1.1K | |
| xx#triplet.sam | 2023-12-04 11:03 | 267 | |
| xx#unsorted.sam | 2023-12-04 11:03 | 320 | |
| xx.fa | 2023-12-04 11:03 | 86 | |
| xx.fa.fai | 2023-12-04 11:03 | 44 | |