Index of /mounts/lovelace/software/picard/3.4.0/build/test-results/barclayTest

[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[ ]TEST-picard.IntelInflaterDeflaterLoadTest.xml2025-04-24 13:18 2.1K 
[ ]TEST-picard.TestDataProviders.xml2025-04-24 13:18 89K 
[ ]TEST-picard.analysis.AbstractWgsMetricsCollectorTest.xml2025-04-24 13:18 901  
[ ]TEST-picard.analysis.AdapterUtilityTest.xml2025-04-24 13:18 14K 
[ ]TEST-picard.analysis.AlignmentSummaryMetricsCollectorTest.xml2025-04-24 13:18 3.1K 
[ ]TEST-picard.analysis.CollectAlignmentSummaryMetricsTest.xml2025-04-24 13:18 32K 
[ ]TEST-picard.analysis.CollectGcBiasMetricsTest.xml2025-04-24 13:18 11K 
[ ]TEST-picard.analysis.CollectInsertSizeMetricsTest.xml2025-04-24 13:18 7.5K 
[ ]TEST-picard.analysis.CollectJumpingLibraryMetricsTest.xml2025-04-24 13:18 1.3K 
[ ]TEST-picard.analysis.CollectMultipleMetricsTest.xml2025-04-24 13:18 25K 
[ ]TEST-picard.analysis.CollectOxoGMetricsTest.xml2025-04-24 13:18 5.8K 
[ ]TEST-picard.analysis.CollectQualityYieldMetricsFlowTest.xml2025-04-24 13:18 1.5K 
[ ]TEST-picard.analysis.CollectQualityYieldMetricsSNVQTest.xml2025-04-24 13:18 1.4K 
[ ]TEST-picard.analysis.CollectQualityYieldMetricsTest.xml2025-04-24 13:18 1.4K 
[ ]TEST-picard.analysis.CollectRnaSeqMetricsTest.xml2025-04-24 13:18 11K 
[ ]TEST-picard.analysis.CollectUmiPrevalenceMetricsTest.xml2025-04-24 13:18 2.4K 
[ ]TEST-picard.analysis.CollectWgsMetricsTest.xml2025-04-24 13:18 39K 
[ ]TEST-picard.analysis.CollectWgsMetricsWithNonZeroCoverageTest.xml2025-04-24 13:18 15K 
[ ]TEST-picard.analysis.CompareMetricsTest.xml2025-04-24 13:18 41K 
[ ]TEST-picard.analysis.CounterManagerTest.xml2025-04-24 13:18 1.2K 
[ ]TEST-picard.analysis.FastWgsMetricsCollectorTest.xml2025-04-24 13:18 1.7K 
[ ]TEST-picard.analysis.MergeableMetricBaseTest.xml2025-04-24 13:18 1.7K 
[ ]TEST-picard.analysis.MultiLevelCollectorTest.xml2025-04-24 13:18 1.1K 
[ ]TEST-picard.analysis.TheoreticalSensitivityTest.xml2025-04-24 13:18 16K 
[ ]TEST-picard.analysis.WgsMetricsProcessorImplTest.xml2025-04-24 13:18 649  
[ ]TEST-picard.analysis.WgsMetricsTest.xml2025-04-24 13:18 18K 
[ ]TEST-picard.analysis.artifacts.CollectSequencingArtifactMetricsTest.xml2025-04-24 13:18 12K 
[ ]TEST-picard.analysis.artifacts.ConvertSequencingArtifactToOxoGTest.xml2025-04-24 13:18 7.7K 
[ ]TEST-picard.analysis.artifacts.TransitionTest.xml2025-04-24 13:18 5.0K 
[ ]TEST-picard.analysis.directed.CollectHsMetricsTest.xml2025-04-24 13:18 33K 
[ ]TEST-picard.analysis.directed.CollectTargetedMetricsTest.xml2025-04-24 13:18 9.8K 
[ ]TEST-picard.analysis.replicates.CollectIndependentReplicatesMetricTest.xml2025-04-24 13:18 12K 
[ ]TEST-picard.annotation.SortGffTest.xml2025-04-24 13:18 19K 
[ ]TEST-picard.arrays.CollectArraysVariantCallingMetricsTest.xml2025-04-24 13:18 11K 
[ ]TEST-picard.arrays.CreateBafRegressMetricsFileTest.xml2025-04-24 13:18 2.2K 
[ ]TEST-picard.arrays.CreateVerifyIDIntensityContaminationMetricsFileTest.xml2025-04-24 13:18 2.8K 
[ ]TEST-picard.arrays.GtcToVcfTest.xml2025-04-24 13:18 1.0K 
[ ]TEST-picard.arrays.MergePedIntoVcfTest.xml2025-04-24 13:18 412  
[ ]TEST-picard.arrays.illumina.Build37ExtendedIlluminaManifestRecordCreatorTest.xml2025-04-24 13:18 12K 
[ ]TEST-picard.arrays.illumina.Build37ExtendedIlluminaManifestTest.xml2025-04-24 13:18 1.4K 
[ ]TEST-picard.arrays.illumina.CombineGenotypingArrayVcfsTest.xml2025-04-24 13:18 736  
[ ]TEST-picard.arrays.illumina.CreateExtendedIlluminaManifestTest.xml2025-04-24 13:18 590  
[ ]TEST-picard.arrays.illumina.IlluminaAdpcFileWriterTest.xml2025-04-24 13:18 450  
[ ]TEST-picard.arrays.illumina.IlluminaManifestTest.xml2025-04-24 13:18 550  
[ ]TEST-picard.arrays.illumina.InfiniumDataFileTest.xml2025-04-24 13:18 3.3K 
[ ]TEST-picard.arrays.illumina.InfiniumNormalizationManifestTest.xml2025-04-24 13:18 614  
[ ]TEST-picard.arrays.illumina.InfiniumVcfFieldsTest.xml2025-04-24 13:18 1.0K 
[ ]TEST-picard.arrays.illumina.VcfToAdpcTest.xml2025-04-24 13:18 14K 
[ ]TEST-picard.cmdline.CommandLineProgramStartupErrorLogTest.xml2025-04-24 13:18 1.2K 
[ ]TEST-picard.cmdline.PicardCommandLineTest.xml2025-04-24 13:18 40K 
[ ]TEST-picard.fastq.BamToBfqTest.xml2025-04-24 13:18 3.0K 
[ ]TEST-picard.fastq.Casava18ReadNameEncoderTest.xml2025-04-24 13:18 427  
[ ]TEST-picard.fingerprint.CalculateFingerprintMetricsTest.xml2025-04-24 13:18 8.0K 
[ ]TEST-picard.fingerprint.CheckFingerprintTest.xml2025-04-24 13:18 37K 
[ ]TEST-picard.fingerprint.ClusterCrosscheckMetricsTest.xml2025-04-24 13:18 4.2K 
[ ]TEST-picard.fingerprint.ConvertHaplotypeDatabaseToVcfTest.xml2025-04-24 13:18 1.5K 
[ ]TEST-picard.fingerprint.CrosscheckFingerprintsTest.xml2025-04-24 13:18 720K 
[ ]TEST-picard.fingerprint.CrosscheckReadGroupFingerprintsTest.xml2025-04-24 13:18 153K 
[ ]TEST-picard.fingerprint.FingerprintCheckerTest.xml2025-04-24 13:18 54K 
[ ]TEST-picard.fingerprint.HaplotypeMapTest.xml2025-04-24 13:18 1.0K 
[ ]TEST-picard.fingerprint.HaplotypeProbabilitiesTest.xml2025-04-24 13:18 6.4K 
[ ]TEST-picard.fingerprint.HaplotypeProbabilityOfNormalGivenTumorTest.xml2025-04-24 13:18 2.0K 
[ ]TEST-picard.fingerprint.LiftOverHaplotypeMapTest.xml2025-04-24 13:18 3.3K 
[ ]TEST-picard.flow.FlowBasedKeyCodecUnitTest.xml2025-04-24 13:18 2.9K 
[ ]TEST-picard.flow.FlowReadGroupInfoUnitTest.xml2025-04-24 13:18 421  
[ ]TEST-picard.illumina.CheckIlluminaDirectoryTest.xml2025-04-24 13:18 75K 
[ ]TEST-picard.illumina.CollectIlluminaBasecallingMetricsTest.xml2025-04-24 13:18 4.7K 
[ ]TEST-picard.illumina.DistanceMetricTest.xml2025-04-24 13:18 5.4K 
[ ]TEST-picard.illumina.ExtractIlluminaBarcodesTest.xml2025-04-24 13:18 28K 
[ ]TEST-picard.illumina.IlluminaBasecallsToFastqTest.xml2025-04-24 13:18 65K 
[ ]TEST-picard.illumina.IlluminaBasecallsToSamAdapterClippingTest.xml2025-04-24 13:18 27K 
[ ]TEST-picard.illumina.IlluminaBasecallsToSamTest.xml2025-04-24 13:18 356K 
[ ]TEST-picard.illumina.IlluminaLaneMetricsCollectorTest.xml2025-04-24 13:18 8.9K 
[ ]TEST-picard.illumina.ReadStructureTest.xml2025-04-24 13:18 14K 
[ ]TEST-picard.illumina.parser.BclParserTest.xml2025-04-24 13:18 13K 
[ ]TEST-picard.illumina.parser.FilterParserTest.xml2025-04-24 13:18 2.9K 
[ ]TEST-picard.illumina.parser.IlluminaDataProviderTest.xml2025-04-24 13:18 3.8K 
[ ]TEST-picard.illumina.parser.IlluminaFileUtilTest.xml2025-04-24 13:18 5.4K 
[ ]TEST-picard.illumina.parser.MultiTileBclFileFakerTest.xml2025-04-24 13:18 456  
[ ]TEST-picard.illumina.parser.PerTileParserTest.xml2025-04-24 13:18 2.2K 
[ ]TEST-picard.illumina.parser.PerTilePerCycleParserTest.xml2025-04-24 13:18 1.6K 
[ ]TEST-picard.illumina.parser.PosParserTest.xml2025-04-24 13:18 2.3K 
[ ]TEST-picard.illumina.parser.TileMetricsUtilTest.xml2025-04-24 13:18 1.7K 
[ ]TEST-picard.illumina.parser.fakers.BclFileFakerTest.xml2025-04-24 13:18 573  
[ ]TEST-picard.illumina.parser.readers.AbstractIlluminaPositionFileReaderTest.xml2025-04-24 13:18 2.6K 
[ ]TEST-picard.illumina.parser.readers.BclReaderTest.xml2025-04-24 13:18 1.4K 
[ ]TEST-picard.illumina.parser.readers.CbclReaderTest.xml2025-04-24 13:18 841  
[ ]TEST-picard.illumina.parser.readers.ClocsFileReaderTest.xml2025-04-24 13:18 1.2K 
[ ]TEST-picard.illumina.parser.readers.FilterFileReaderTest.xml2025-04-24 13:18 1.7K 
[ ]TEST-picard.illumina.parser.readers.LocsFileReaderTest.xml2025-04-24 13:18 1.0K 
[ ]TEST-picard.illumina.parser.readers.MMapBackedIteratorFactoryTest.xml2025-04-24 13:18 1.6K 
[ ]TEST-picard.illumina.parser.readers.PosFileReaderTest.xml2025-04-24 13:18 1.2K 
[ ]TEST-picard.metrics.CollectRrbsMetricsTest.xml2025-04-24 13:18 2.0K 
[ ]TEST-picard.metrics.MetricBaseTest.xml2025-04-24 13:18 11K 
[ ]TEST-picard.nio.HttpNioIntegrationTest.xml2025-04-24 13:18 417  
[ ]TEST-picard.pedigree.PedFileTest.xml2025-04-24 13:18 793  
[ ]TEST-picard.pedigree.SexTest.xml2025-04-24 13:18 1.8K 
[ ]TEST-picard.reference.NonNFastaSizeTest.xml2025-04-24 13:18 2.1K 
[ ]TEST-picard.sam.AbstractAlignmentMergerTest.xml2025-04-24 13:18 104K 
[ ]TEST-picard.sam.AddCommentsToBamTest.xml2025-04-24 13:18 2.4K 
[ ]TEST-picard.sam.AddOATagTest.xml2025-04-24 13:18 4.1K 
[ ]TEST-picard.sam.BuildBamIndexTest.xml2025-04-24 13:18 4.7K 
[ ]TEST-picard.sam.CleanSamTest.xml2025-04-24 13:18 12K 
[ ]TEST-picard.sam.CompareSAMsTest.xml2025-04-24 13:18 107K 
[ ]TEST-picard.sam.CramCompatibilityTest.xml2025-04-24 13:18 100K 
[ ]TEST-picard.sam.CreateSequenceDictionaryTest.xml2025-04-24 13:18 9.1K 
[ ]TEST-picard.sam.DownsampleSamTest.xml2025-04-24 13:18 242K 
[ ]TEST-picard.sam.DuplicationMetricsTest.xml2025-04-24 13:18 5.8K 
[ ]TEST-picard.sam.FastqToSamTest.xml2025-04-24 13:18 63K 
[ ]TEST-picard.sam.FilterSamReadsTest.xml2025-04-24 13:18 301K 
[ ]TEST-picard.sam.FixMateInformationTest.xml2025-04-24 13:18 3.4K 
[ ]TEST-picard.sam.GatherBamFilesTest.xml2025-04-24 13:18 6.1K 
[ ]TEST-picard.sam.MergeBamAlignmentTest.xml2025-04-24 13:18 284K 
[ ]TEST-picard.sam.MergeSamFilesTest.xml2025-04-24 13:18 2.6K 
[ ]TEST-picard.sam.PipedDataTest.xml2025-04-24 13:18 812  
[ ]TEST-picard.sam.PositionBasedDownsampleSamTest.xml2025-04-24 13:18 100K 
[ ]TEST-picard.sam.ReorderSamTest.xml2025-04-24 13:18 320K 
[ ]TEST-picard.sam.RevertSamTest.xml2025-04-24 13:18 56K 
[ ]TEST-picard.sam.SamErrorMetric.BaseErrorAggregationTest.xml2025-04-24 13:18 693  
[ ]TEST-picard.sam.SamErrorMetric.BaseErrorCalculationTest.xml2025-04-24 13:18 761  
[ ]TEST-picard.sam.SamErrorMetric.CollectSamErrorMetricsTest.xml2025-04-24 13:18 112K 
[ ]TEST-picard.sam.SamErrorMetric.ReadBaseStratificationTest.xml2025-04-24 13:18 67K 
[ ]TEST-picard.sam.SamFormatConverterTest.xml2025-04-24 13:18 2.5K 
[ ]TEST-picard.sam.SamToFastqTest.xml2025-04-24 13:18 29K 
[ ]TEST-picard.sam.SamToFastqWithTagsTest.xml2025-04-24 13:18 47K 
[ ]TEST-picard.sam.SetNmMdAndUqTagsTest.xml2025-04-24 13:18 14K 
[ ]TEST-picard.sam.SortSamTest.xml2025-04-24 13:18 1.2K 
[ ]TEST-picard.sam.SplitSamByLibraryTest.xml2025-04-24 13:18 793  
[ ]TEST-picard.sam.SplitSamByNumberOfReadsTest.xml2025-04-24 13:18 24K 
[ ]TEST-picard.sam.ValidateSamFileTest.xml2025-04-24 13:18 36K 
[ ]TEST-picard.sam.ViewSamTest.xml2025-04-24 13:18 471  
[ ]TEST-picard.sam.markduplicates.AsIsCollectDuplicateMetricsTest.xml2025-04-24 13:18 9.3K 
[ ]TEST-picard.sam.markduplicates.AsIsMarkDuplicatesTest.xml2025-04-24 13:18 31K 
[ ]TEST-picard.sam.markduplicates.CheckDuplicateMarkingTest.xml2025-04-24 13:18 13K 
[ ]TEST-picard.sam.markduplicates.ElcHashBasedDuplicatesFinderTest.xml2025-04-24 13:18 7.0K 
[ ]TEST-picard.sam.markduplicates.ElcIdenticalBasesDuplicatesFinderTest.xml2025-04-24 13:18 6.1K 
[ ]TEST-picard.sam.markduplicates.EstimateLibraryComplexityTest.xml2025-04-24 13:18 18K 
[ ]TEST-picard.sam.markduplicates.MarkDuplicateWithMissingReadOneBarcodeTest.xml2025-04-24 13:18 423K 
[ ]TEST-picard.sam.markduplicates.MarkDuplicateWithMissingReadTwoBarcodeTest.xml2025-04-24 13:18 423K 
[ ]TEST-picard.sam.markduplicates.MarkDuplicateWithMissingSampleBarcodeTest.xml2025-04-24 13:18 422K 
[ ]TEST-picard.sam.markduplicates.MarkDuplicatesForFlowHelperTest.xml2025-04-24 13:18 70K 
[ ]TEST-picard.sam.markduplicates.MarkDuplicatesSetSizeHistogramTest.xml2025-04-24 13:18 380K 
[ ]TEST-picard.sam.markduplicates.MarkDuplicatesTagRepresentativeReadIndexTest.xml2025-04-24 13:18 395K 
[ ]TEST-picard.sam.markduplicates.MarkDuplicatesTest.xml2025-04-24 13:18 412K 
[ ]TEST-picard.sam.markduplicates.MarkDuplicatesTestQueryNameSorted.xml2025-04-24 13:18 432K 
[ ]TEST-picard.sam.markduplicates.MarkDuplicatesWithMateCigarTest.xml2025-04-24 13:18 199K 
[ ]TEST-picard.sam.markduplicates.SimpleMarkDuplicatesWithMateCigarTest.xml2025-04-24 13:18 192K 
[ ]TEST-picard.sam.markduplicates.UmiAwareMarkDuplicatesWithMateCigarTest.xml2025-04-24 13:18 279K 
[ ]TEST-picard.sam.markduplicates.UmiUtilTest.xml2025-04-24 13:18 3.6K 
[ ]TEST-picard.sam.markduplicates.util.OpticalDuplicateFinderTest.xml2025-04-24 13:18 1.5K 
[ ]TEST-picard.sam.util.PrimaryAlignmentKeyTest.xml2025-04-24 13:18 2.3K 
[ ]TEST-picard.sam.util.ReadNameParserTests.xml2025-04-24 13:18 3.7K 
[ ]TEST-picard.sam.util.SamComparisonTest.xml2025-04-24 13:18 7.0K 
[ ]TEST-picard.util.AccumulateQualityYieldMetricsTest.xml2025-04-24 13:18 1.4K 
[ ]TEST-picard.util.AlleleSubsettingUtilsTest.xml2025-04-24 13:18 5.8K 
[ ]TEST-picard.util.BedToIntervalListTest.xml2025-04-24 13:18 5.5K 
[ ]TEST-picard.util.ClippingUtilityTest.xml2025-04-24 13:18 9.2K 
[ ]TEST-picard.util.DelimitedTextFileWithHeaderIteratorTest.xml2025-04-24 13:18 570  
[ ]TEST-picard.util.EditDistanceQueriesTest.xml2025-04-24 13:18 5.2K 
[ ]TEST-picard.util.FifoBufferTest.xml2025-04-24 13:18 393  
[ ]TEST-picard.util.GraphUtilsTest.xml2025-04-24 13:18 574  
[ ]TEST-picard.util.IlluminaUtilTest.xml2025-04-24 13:18 936  
[ ]TEST-picard.util.IntervalListScattererTest.xml2025-04-24 13:18 3.6K 
[ ]TEST-picard.util.IntervalListToBedTest.xml2025-04-24 13:18 3.5K 
[ ]TEST-picard.util.IntervalListToolsTest.xml2025-04-24 13:18 388K 
[ ]TEST-picard.util.LiftoverUtilsTest.xml2025-04-24 13:18 3.2K 
[ ]TEST-picard.util.LiftoverVcfTest.xml2025-04-24 13:18 99K 
[ ]TEST-picard.util.MathUtilTest.xml2025-04-24 13:18 7.1K 
[ ]TEST-picard.util.MergingIteratorTest.xml2025-04-24 13:18 620  
[ ]TEST-picard.util.MiscTest.xml2025-04-24 13:18 380  
[ ]TEST-picard.util.QuerySortedReadPairIteratorUtilTest.xml2025-04-24 13:18 793  
[ ]TEST-picard.util.RExecutorTest.xml2025-04-24 13:18 1.0K 
[ ]TEST-picard.util.ScatterIntervalsByNsTest.xml2025-04-24 13:18 3.7K 
[ ]TEST-picard.util.SequenceDictionaryUtilsTest.xml2025-04-24 13:18 1.2K 
[ ]TEST-picard.util.TabbedTextFileWithHeaderParserTest.xml2025-04-24 13:18 555  
[ ]TEST-picard.util.TextFileParsersTest.xml2025-04-24 13:18 3.3K 
[ ]TEST-picard.util.UnsignedTypeUtilTest.xml2025-04-24 13:18 3.6K 
[ ]TEST-picard.util.help.DocumentationGenerationIntegrationTest.xml2025-04-24 13:18 73K 
[ ]TEST-picard.vcf.AccumulateVariantCallingMetricsTest.xml2025-04-24 13:18 735  
[ ]TEST-picard.vcf.ByIntervalListVariantContextIteratorTest.xml2025-04-24 13:18 1.1K 
[ ]TEST-picard.vcf.CallingMetricAccumulatorTest.xml2025-04-24 13:18 1.8K 
[ ]TEST-picard.vcf.CollectVariantCallingMetricsTest.xml2025-04-24 13:18 1.1K 
[ ]TEST-picard.vcf.FixVcfHeaderTest.xml2025-04-24 13:18 12K 
[ ]TEST-picard.vcf.GatherVcfsTest.xml2025-04-24 13:18 16K 
[ ]TEST-picard.vcf.GenotypeConcordanceGA4GHSchemeTest.xml2025-04-24 13:18 6.6K 
[ ]TEST-picard.vcf.GenotypeConcordanceGA4GHSchemeWithMissingTest.xml2025-04-24 13:18 2.1K 
[ ]TEST-picard.vcf.GenotypeConcordanceTest.xml2025-04-24 13:18 83K 
[ ]TEST-picard.vcf.MakeVcfSampleNameMapTest.xml2025-04-24 13:18 2.2K 
[ ]TEST-picard.vcf.MendelianViolations.FindMendelianViolationsTest.xml2025-04-24 13:18 956  
[ ]TEST-picard.vcf.MergeVcfsTest.xml2025-04-24 13:18 6.8K 
[ ]TEST-picard.vcf.SortVcfsTest.xml2025-04-24 13:18 11K 
[ ]TEST-picard.vcf.SplitVcfsTest.xml2025-04-24 13:18 1.3K 
[ ]TEST-picard.vcf.UpdateVcfSequenceDictionaryTest.xml2025-04-24 13:18 3.6K 
[ ]TEST-picard.vcf.VariantContextComparatorTest.xml2025-04-24 13:18 930  
[ ]TEST-picard.vcf.VcfFormatConverterTest.xml2025-04-24 13:18 7.1K 
[ ]TEST-picard.vcf.VcfToIntervalListTest.xml2025-04-24 13:18 2.4K 
[ ]TEST-picard.vcf.filter.TestFilterVcf.xml2025-04-24 13:18 1.8K 
[ ]TEST-picard.vcf.processor.AccumulatorExecutorTest.xml2025-04-24 13:18 419  
[ ]TEST-picard.vcf.processor.ByWholeContigTest.xml2025-04-24 13:18 407  
[ ]TEST-picard.vcf.processor.ThreadsafeTest.xml2025-04-24 13:18 743  
[ ]TEST-picard.vcf.processor.VcfFileSegmentGeneratorTest.xml2025-04-24 13:18 449  
[ ]TEST-picard.vcf.processor.VcfPathSegmentGeneratorTest.xml2025-04-24 13:18 449  
[ ]TEST-picard.vcf.processor.WidthLimitingDecoratorTest.xml2025-04-24 13:18 431  
[DIR]binary/2025-04-24 13:18 -  
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