Class picard.vcf.VcfToIntervalListTest

2

tests

0

failures

0

ignored

0.021s

duration

100%

successful

Tests

Test Duration Result
testExcludingFiltered[0](testdata/picard/vcf/small_m2_more_variants.vcf, false, true, 9) 0.012s passed
testExcludingFiltered[1](testdata/picard/vcf/small_m2_more_variants.vcf, true, false, 10) 0.009s passed

Standard error

[Thu Apr 24 13:18:12 EDT 2025] VcfToIntervalList --INPUT /mounts/lovelace/software/picard/picard/testdata/picard/vcf/small_m2_more_variants.vcf --OUTPUT /tmp/vcftointervallist_14645747030059091333.interval_list --VARIANT_ID_METHOD USE_FIRST --INCLUDE_FILTERED false --VERBOSITY INFO --QUIET false --VALIDATION_STRINGENCY STRICT --COMPRESSION_LEVEL 5 --MAX_RECORDS_IN_RAM 2279706 --CREATE_INDEX false --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Thu Apr 24 13:18:12 EDT 2025] Executing as root@lovelace on Linux 6.1.0-28-amd64 amd64; OpenJDK 64-Bit Server VM 17.0.13+11-Debian-2deb12u1; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:null
[Thu Apr 24 13:18:12 EDT 2025] picard.vcf.VcfToIntervalList done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1073741824
[Thu Apr 24 13:18:12 EDT 2025] VcfToIntervalList --INPUT /mounts/lovelace/software/picard/picard/testdata/picard/vcf/small_m2_more_variants.vcf --OUTPUT /tmp/vcftointervallist_8170215517358251116.interval_list --VARIANT_ID_METHOD CONCAT_ALL --INCLUDE_FILTERED true --VERBOSITY INFO --QUIET false --VALIDATION_STRINGENCY STRICT --COMPRESSION_LEVEL 5 --MAX_RECORDS_IN_RAM 2279706 --CREATE_INDEX false --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Thu Apr 24 13:18:12 EDT 2025] Executing as root@lovelace on Linux 6.1.0-28-amd64 amd64; OpenJDK 64-Bit Server VM 17.0.13+11-Debian-2deb12u1; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:null
[Thu Apr 24 13:18:12 EDT 2025] picard.vcf.VcfToIntervalList done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1073741824