Class picard.vcf.VcfFormatConverterTest

5

tests

0

failures

0

ignored

1.308s

duration

100%

successful

Tests

Test Duration Result
testBcfToBcf 0.229s passed
testBcfToVcf 0.413s passed
testVcfToBcf 0.335s passed
testVcfToVcf 0.162s passed
testVcfToVcfGz 0.169s passed

Standard error

[Thu Apr 24 13:18:11 EDT 2025] VcfFormatConverter --INPUT /mounts/lovelace/software/picard/picard/testdata/picard/vcf/vcfFormatTest.bcf --OUTPUT /tmp/likeTest17416171532436073795.bcf --REQUIRE_INDEX true --VERBOSITY INFO --QUIET false --VALIDATION_STRINGENCY STRICT --COMPRESSION_LEVEL 5 --MAX_RECORDS_IN_RAM 2279706 --CREATE_INDEX true --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Thu Apr 24 13:18:11 EDT 2025] Executing as root@lovelace on Linux 6.1.0-28-amd64 amd64; OpenJDK 64-Bit Server VM 17.0.13+11-Debian-2deb12u1; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:null
[Thu Apr 24 13:18:11 EDT 2025] picard.vcf.VcfFormatConverter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1073741824
[Thu Apr 24 13:18:11 EDT 2025] VcfFormatConverter --INPUT /mounts/lovelace/software/picard/picard/testdata/picard/vcf/vcfFormatTest.bcf --OUTPUT /tmp/backAndForth7833996742208732934.vcf --REQUIRE_INDEX true --VERBOSITY INFO --QUIET false --VALIDATION_STRINGENCY STRICT --COMPRESSION_LEVEL 5 --MAX_RECORDS_IN_RAM 2279706 --CREATE_INDEX true --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Thu Apr 24 13:18:11 EDT 2025] Executing as root@lovelace on Linux 6.1.0-28-amd64 amd64; OpenJDK 64-Bit Server VM 17.0.13+11-Debian-2deb12u1; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:null
[Thu Apr 24 13:18:11 EDT 2025] picard.vcf.VcfFormatConverter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1073741824
[Thu Apr 24 13:18:11 EDT 2025] VcfFormatConverter --INPUT /tmp/backAndForth7833996742208732934.vcf --OUTPUT /tmp/backAndForth8642203664129654838.bcf --REQUIRE_INDEX true --VERBOSITY INFO --QUIET false --VALIDATION_STRINGENCY STRICT --COMPRESSION_LEVEL 5 --MAX_RECORDS_IN_RAM 2279706 --CREATE_INDEX true --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Thu Apr 24 13:18:11 EDT 2025] Executing as root@lovelace on Linux 6.1.0-28-amd64 amd64; OpenJDK 64-Bit Server VM 17.0.13+11-Debian-2deb12u1; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:null
[Thu Apr 24 13:18:12 EDT 2025] picard.vcf.VcfFormatConverter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1073741824
[Thu Apr 24 13:18:12 EDT 2025] VcfFormatConverter --INPUT /mounts/lovelace/software/picard/picard/testdata/picard/vcf/vcfFormatTest.vcf --OUTPUT /tmp/backAndForth14694082121783869964.bcf --REQUIRE_INDEX true --VERBOSITY INFO --QUIET false --VALIDATION_STRINGENCY STRICT --COMPRESSION_LEVEL 5 --MAX_RECORDS_IN_RAM 2279706 --CREATE_INDEX true --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Thu Apr 24 13:18:12 EDT 2025] Executing as root@lovelace on Linux 6.1.0-28-amd64 amd64; OpenJDK 64-Bit Server VM 17.0.13+11-Debian-2deb12u1; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:null
[Thu Apr 24 13:18:12 EDT 2025] picard.vcf.VcfFormatConverter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1073741824
[Thu Apr 24 13:18:12 EDT 2025] VcfFormatConverter --INPUT /tmp/backAndForth14694082121783869964.bcf --OUTPUT /tmp/backAndForth12525554549597079245.vcf --REQUIRE_INDEX true --VERBOSITY INFO --QUIET false --VALIDATION_STRINGENCY STRICT --COMPRESSION_LEVEL 5 --MAX_RECORDS_IN_RAM 2279706 --CREATE_INDEX true --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Thu Apr 24 13:18:12 EDT 2025] Executing as root@lovelace on Linux 6.1.0-28-amd64 amd64; OpenJDK 64-Bit Server VM 17.0.13+11-Debian-2deb12u1; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:null
[Thu Apr 24 13:18:12 EDT 2025] picard.vcf.VcfFormatConverter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1073741824
[Thu Apr 24 13:18:12 EDT 2025] VcfFormatConverter --INPUT /mounts/lovelace/software/picard/picard/testdata/picard/vcf/vcfFormatTest.vcf --OUTPUT /tmp/likeTest11740722311869552280.vcf --REQUIRE_INDEX true --VERBOSITY INFO --QUIET false --VALIDATION_STRINGENCY STRICT --COMPRESSION_LEVEL 5 --MAX_RECORDS_IN_RAM 2279706 --CREATE_INDEX true --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Thu Apr 24 13:18:12 EDT 2025] Executing as root@lovelace on Linux 6.1.0-28-amd64 amd64; OpenJDK 64-Bit Server VM 17.0.13+11-Debian-2deb12u1; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:null
[Thu Apr 24 13:18:12 EDT 2025] picard.vcf.VcfFormatConverter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1073741824
[Thu Apr 24 13:18:12 EDT 2025] VcfFormatConverter --INPUT /mounts/lovelace/software/picard/picard/testdata/picard/vcf/vcfFormatTest.vcf --OUTPUT /tmp/backAndForth13944876577146888842.vcf.gz --CREATE_INDEX false --REQUIRE_INDEX true --VERBOSITY INFO --QUIET false --VALIDATION_STRINGENCY STRICT --COMPRESSION_LEVEL 5 --MAX_RECORDS_IN_RAM 2279706 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Thu Apr 24 13:18:12 EDT 2025] Executing as root@lovelace on Linux 6.1.0-28-amd64 amd64; OpenJDK 64-Bit Server VM 17.0.13+11-Debian-2deb12u1; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:null
[Thu Apr 24 13:18:12 EDT 2025] picard.vcf.VcfFormatConverter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1073741824
[Thu Apr 24 13:18:12 EDT 2025] VcfFormatConverter --INPUT /tmp/backAndForth13944876577146888842.vcf.gz --OUTPUT /tmp/backAndForth17615345747043793710.vcf --REQUIRE_INDEX false --VERBOSITY INFO --QUIET false --VALIDATION_STRINGENCY STRICT --COMPRESSION_LEVEL 5 --MAX_RECORDS_IN_RAM 2279706 --CREATE_INDEX true --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Thu Apr 24 13:18:12 EDT 2025] Executing as root@lovelace on Linux 6.1.0-28-amd64 amd64; OpenJDK 64-Bit Server VM 17.0.13+11-Debian-2deb12u1; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:null
[Thu Apr 24 13:18:12 EDT 2025] picard.vcf.VcfFormatConverter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1073741824