Class picard.vcf.UpdateVcfSequenceDictionaryTest

all > picard.vcf > UpdateVcfSequenceDictionaryTest
4

tests
0

failures
0

ignored
1.063s

duration
100%

successful

Tests

Test Duration Result
testCaptureStdout 1.004s passed
testUpdateVcfSequenceDictionary[0](/tmp/UpdateVcfSequenceDictionaryTest.tmp7760586206584666613updateVcfSequenceDictionaryTest-delete-me.vcf.gz) 0.023s passed
testUpdateVcfSequenceDictionary[1](/tmp/UpdateVcfSequenceDictionaryTest.tmp7760586206584666613updateVcfSequenceDictionaryTest-delete-me.vcf) 0.021s passed
testUpdateVcfSequenceDictionary[2](/dev/stdout) 0.015s passed

Standard error

[Thu Apr 24 13:18:11 EDT 2025] UpdateVcfSequenceDictionary --INPUT testdata/picard/vcf/vcfFormatTest.vcf --OUTPUT /tmp/UpdateVcfSequenceDictionaryTest.tmp7760586206584666613updateVcfSequenceDictionaryTest-delete-me.vcf.gz --SEQUENCE_DICTIONARY testdata/picard/vcf/vcfFormatTest.bad_dict.vcf --VERBOSITY INFO --QUIET false --VALIDATION_STRINGENCY STRICT --COMPRESSION_LEVEL 5 --MAX_RECORDS_IN_RAM 2279706 --CREATE_INDEX false --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Thu Apr 24 13:18:11 EDT 2025] Executing as root@lovelace on Linux 6.1.0-28-amd64 amd64; OpenJDK 64-Bit Server VM 17.0.13+11-Debian-2deb12u1; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:null
[Thu Apr 24 13:18:11 EDT 2025] picard.vcf.UpdateVcfSequenceDictionary done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1073741824
[Thu Apr 24 13:18:11 EDT 2025] UpdateVcfSequenceDictionary --INPUT testdata/picard/vcf/vcfFormatTest.vcf --OUTPUT /tmp/UpdateVcfSequenceDictionaryTest.tmp7760586206584666613updateVcfSequenceDictionaryTest-delete-me.vcf --SEQUENCE_DICTIONARY testdata/picard/vcf/vcfFormatTest.bad_dict.vcf --VERBOSITY INFO --QUIET false --VALIDATION_STRINGENCY STRICT --COMPRESSION_LEVEL 5 --MAX_RECORDS_IN_RAM 2279706 --CREATE_INDEX false --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Thu Apr 24 13:18:11 EDT 2025] Executing as root@lovelace on Linux 6.1.0-28-amd64 amd64; OpenJDK 64-Bit Server VM 17.0.13+11-Debian-2deb12u1; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:null
[Thu Apr 24 13:18:11 EDT 2025] picard.vcf.UpdateVcfSequenceDictionary done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1073741824
[Thu Apr 24 13:18:11 EDT 2025] UpdateVcfSequenceDictionary --INPUT testdata/picard/vcf/vcfFormatTest.vcf --OUTPUT /dev/fd/5463 --SEQUENCE_DICTIONARY testdata/picard/vcf/vcfFormatTest.bad_dict.vcf --VERBOSITY INFO --QUIET false --VALIDATION_STRINGENCY STRICT --COMPRESSION_LEVEL 5 --MAX_RECORDS_IN_RAM 2279706 --CREATE_INDEX false --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Thu Apr 24 13:18:11 EDT 2025] Executing as root@lovelace on Linux 6.1.0-28-amd64 amd64; OpenJDK 64-Bit Server VM 17.0.13+11-Debian-2deb12u1; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:null
[Thu Apr 24 13:18:11 EDT 2025] picard.vcf.UpdateVcfSequenceDictionary done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1073741824