Class picard.util.AlleleSubsettingUtilsTest

all > picard.util > AlleleSubsettingUtilsTest
17

tests
0

failures
0

ignored
0.005s

duration
100%

successful

Tests

Test Duration Result
testSwapAlleles[0]([VC test @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, C, G, [VC test @ 20:10 Q. of type=SNP alleles=[A*, G] attr={} GT=[] filters=, true) 0s passed
testSwapAlleles[1]([VC test @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[[NA12878 A*/C GQ 100 DP 10]] filters=, C, G, [VC test @ 20:10 Q. of type=SNP alleles=[A*, G] attr={} GT=[[NA12878 A*/G GQ 100 DP 10]] filters=, true) 0.001s passed
testSwapAlleles[2]([VC test @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[[NA12878 A*/A* GQ 100 DP 10]] filters=, C, G, [VC test @ 20:10 Q. of type=SNP alleles=[A*, G] attr={} GT=[[NA12878 A*/A* GQ 100 DP 10]] filters=, true) 0s passed
testSwapAlleles[3]([VC test @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[[NA12878 C/C GQ 100 DP 10]] filters=, C, G, [VC test @ 20:10 Q. of type=SNP alleles=[A*, G] attr={} GT=[[NA12878 G/G GQ 100 DP 10]] filters=, true) 0s passed
testSwapAlleles[4]([VC test @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, <NON_REF>, G, null, false) 0.001s passed
testUpdatePLsAndADData[0]([VC test @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[[NA12878 A*/A* GQ 8 DP 10 AD 10,2 PL 1000,900,0]] filters=, [VC test @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[NA12878 A*/A* GQ 8 DP 10 AD 10,2 PL 1000,900,0]]) 0s passed
testUpdatePLsAndADData[10]([VC test-5 @ 20:10 Q. of type=SNP alleles=[A*, C, G] attr={} GT=[[NA12878 A*/A* GQ 100 DP 10 AD 0,1,21 PL 200,100,300,400,500,0]] filters=, [VC test-6 @ 20:10 Q. of type=SNP alleles=[A*, G] attr={} GT=[] filters=, [[NA12878 G/G GQ 200 DP 10 AD 0,21 PL 200,400,0]]) 0s passed
testUpdatePLsAndADData[11]([VC test-6 @ 20:10 Q. of type=SNP alleles=[A*, C, G] attr={} GT=[[NA12878 A*/A* GQ 100 DP 10 AD 0,1,21]] filters=, [VC test-7 @ 20:10 Q. of type=SNP alleles=[A*, G] attr={} GT=[] filters=, [[NA12878 ./. DP 10 AD 0,21]]) 0s passed
testUpdatePLsAndADData[1]([VC test @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[[NA12878 A*/C GQ 8 DP 10 AD 10,2 PL 900,1000,0]] filters=, [VC test @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[NA12878 A*/C GQ 8 DP 10 AD 10,2 PL 900,1000,0]]) 0.001s passed
testUpdatePLsAndADData[2]([VC test @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[[NA12878 C/C GQ 8 DP 10 AD 10,2 PL 0,900,1000]] filters=, [VC test @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[NA12878 C/C GQ 8 DP 10 AD 10,2 PL 0,900,1000]]) 0s passed
testUpdatePLsAndADData[3]([VC test @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[[NA12878 C/C GQ 0 DP 10 PL 0,0,0]] filters=, [VC test @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[NA12878 C/C GQ 0 DP 10 PL 0,0,0]]) 0s passed
testUpdatePLsAndADData[4]([VC test @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[[NA12878 ./. DP 10]] filters=, [VC test @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[NA12878 ./. DP 10]]) 0s passed
testUpdatePLsAndADData[5]([VC test-0 @ 20:10 Q. of type=SNP alleles=[A*, C, G] attr={} GT=[[NA12878 A*/A* GQ 100 DP 10 AD 20,0,1 PL 0,100,200,300,400,500]] filters=, [VC test-1 @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[NA12878 A*/A* GQ 100 DP 10 AD 20,0 PL 0,100,200]]) 0.001s passed
testUpdatePLsAndADData[6]([VC test-1 @ 20:10 Q. of type=SNP alleles=[A*, C, G] attr={} GT=[[NA12878 A*/A* GQ 100 DP 10 AD 10,10,1 PL 100,0,200,300,400,500]] filters=, [VC test-2 @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[NA12878 A*/C GQ 100 DP 10 AD 10,10 PL 100,0,200]]) 0s passed
testUpdatePLsAndADData[7]([VC test-2 @ 20:10 Q. of type=SNP alleles=[A*, C, G] attr={} GT=[[NA12878 A*/A* GQ 100 DP 10 AD 0,20,1 PL 200,100,0,300,400,500]] filters=, [VC test-3 @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[NA12878 C/C GQ 100 DP 10 AD 0,20 PL 200,100,0]]) 0s passed
testUpdatePLsAndADData[8]([VC test-3 @ 20:10 Q. of type=SNP alleles=[A*, C, G] attr={} GT=[[NA12878 A*/A* GQ 100 DP 10 AD 10,0,11 PL 200,100,300,0,400,500]] filters=, [VC test-4 @ 20:10 Q. of type=SNP alleles=[A*, G] attr={} GT=[] filters=, [[NA12878 A*/G GQ 200 DP 10 AD 10,11 PL 200,0,500]]) 0s passed
testUpdatePLsAndADData[9]([VC test-4 @ 20:10 Q. of type=SNP alleles=[A*, C, G] attr={} GT=[[NA12878 A*/A* GQ 100 DP 10 AD 0,12,11 PL 200,100,300,400,0,500]] filters=, [VC test-5 @ 20:10 Q. of type=SNP alleles=[A*, G] attr={} GT=[] filters=, [[NA12878 A*/A* GQ 200 DP 10 AD 0,11 PL 0,200,300]]) 0.001s passed