Class picard.illumina.parser.IlluminaFileUtilTest

30

tests

0

failures

0

ignored

0.120s

duration

100%

successful

Tests

Test Duration Result
invalidLaneForLTRegex[0](-1000) 0s passed
invalidLaneForLTRegex[1](-10) 0s passed
invalidLaneForLTRegex[2](-1) 0s passed
missingTileTest[0](1, [Bcl, Barcode], [Bcl, Barcode], [BaseCalls/s_1_0007_barcode.txt.gz], .gz) 0.009s passed
missingTileTest[1](2, [Bcl, Cbcl, Locs, Clocs, Pos, Filter, Barcode, MultiTileFilter, MultiTileLocs, MultiTileBcl], [Bcl, Cbcl, Locs, Clocs, Pos, Filter, Barcode, MultiTileFilter, MultiTileLocs, MultiTileBcl], [BaseCalls/L002/C1.1/s_2_2.bcl, BaseCalls/L002/C2.1/s_2_2.bcl, BaseCalls/L002/C3.1/s_2_2.bcl, BaseCalls/L002/C4.1/s_2_2.bcl, BaseCalls/L002/C5.1/s_2_2.bcl, BaseCalls/L002/C6.1/s_2_2.bcl, BaseCalls/L002/C7.1/s_2_2.bcl, BaseCalls/L002/C8.1/s_2_2.bcl, BaseCalls/L002/C9.1/s_2_2.bcl, BaseCalls/L002/C10.1/s_2_2.bcl, BaseCalls/L002/C11.1/s_2_2.bcl, BaseCalls/L002/C12.1/s_2_2.bcl, BaseCalls/L002/C13.1/s_2_2.bcl, BaseCalls/L002/C14.1/s_2_2.bcl, BaseCalls/L002/C15.1/s_2_2.bcl, BaseCalls/L002/C16.1/s_2_2.bcl, BaseCalls/L002/C17.1/s_2_2.bcl, BaseCalls/L002/C18.1/s_2_2.bcl, BaseCalls/L002/C19.1/s_2_2.bcl, BaseCalls/L002/C20.1/s_2_2.bcl], .gz) 0.010s passed
missingTileTest[2](3, [Bcl, Cbcl, Locs, Clocs, Pos, Filter, Barcode, MultiTileFilter, MultiTileLocs, MultiTileBcl], [Bcl, Cbcl, Locs, Clocs, Pos, Filter, Barcode, MultiTileFilter, MultiTileLocs, MultiTileBcl], [BaseCalls/L003/C1.1/s_3_2.bcl], .bz2) 0.009s passed
missingTileTest[3](4, [Bcl, Cbcl, Locs, Clocs, Pos, Filter, Barcode, MultiTileFilter, MultiTileLocs, MultiTileBcl], [Pos, Locs], [s_4_10_pos.txt, L004/s_4_2.locs], null) 0.008s passed
notMatchingRegexTest[0](0, s_-0_111) 0s passed
notMatchingRegexTest[1](1, s_1_A3) 0s passed
notMatchingRegexTest[2](10, s_-100_1) 0s passed
notMatchingRegexTest[3](20, s_21_1) 0s passed
passNewUtilTest 0.027s passed
passingVerifyTest 0.027s passed
perTileFileUtilsTest[0](Locs, null, false, L007) 0.003s passed
perTileFileUtilsTest[1](Clocs, null, false, L007) 0s passed
perTileFileUtilsTest[2](Pos, .gz, false, null) 0.001s passed
perTileFileUtilsTest[3](Pos, null, false, null) 0s passed
perTileFileUtilsTest[4](Filter, null, true, BaseCalls/L007) 0.001s passed
perTileFileUtilsTest[5](Barcode, .bz2, true, BaseCalls) 0.001s passed
perTilePerCycleFileUtilsMissingCycleTest[0]([Range(10, 15, 6)]) 0.003s passed
perTilePerCycleFileUtilsMissingCycleTest[1]([Range(9, 12, 4), Range(14, 15, 2)]) 0.002s passed
perTilePerCycleFileUtilsTest[0](Bcl, BaseCalls/L007, [I@3ab7a939, false, false) 0.010s passed
perTilePerCycleFileUtilsTest[1](Bcl, BaseCalls/L007, [I@5a03161b, true, true) 0.008s passed
regexTests[0](0, s_0_1111.test) 0s passed
regexTests[1](1, s_1_23.test) 0s passed
regexTests[2](10, s_10_1.test) 0s passed
testHasCbcls[0](1, true, true, true) 0.001s passed
testHasCbcls[1](1, true, false, false) 0s passed
testHasCbcls[2](1, false, false, false) 0s passed
testHasCbcls[3](-1, false, false, false) 0s passed