Class picard.illumina.parser.BclParserTest

all > picard.illumina.parser > BclParserTest
71

tests
0

failures
0

ignored
0.522s

duration
100%

successful

Tests

Test Duration Result
eamssParsingTestNoGSeries[0](BasesAndQuals( G G G G G G G G G , 13,7,35,32,31,33,31,26,29,, 13,7,35,32,31,33,31,26,29,)) 0s passed
eamssParsingTestNoGSeries[10](BasesAndQuals( T A C , 2,11,13,, 2,2,2,)) 0s passed
eamssParsingTestNoGSeries[11](BasesAndQuals( T A C G G . . T C C C C T T T G G G A T G C A T A C G G . . T C C C C T T T G G G A T G C A , 25,16,16,33,22,2,2,33,35,3,31,38,22,19,25,16,16,31,30,2,2,33,26,3,31,38,22,19,2,2,30,27,28,16,2,2,30,16,19,21,22,2,19,16,2,2,, 25,16,16,33,22,2,2,33,35,3,31,38,22,19,25,16,16,31,30,2,2,33,26,3,31,38,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,)) 0s passed
eamssParsingTestNoGSeries[1](BasesAndQuals( G G G G G G G G G , 13,7,35,26,18,19,35,8,33,, 13,7,35,26,18,19,35,8,33,)) 0s passed
eamssParsingTestNoGSeries[2](BasesAndQuals( A C C C C C C C C C C C T G G C T A A , 7,8,33,7,2,33,16,17,19,7,6,5,35,2,33,22,18,16,25,, 7,8,33,7,2,33,16,17,19,7,6,5,35,2,33,22,18,16,25,)) 0s passed
eamssParsingTestNoGSeries[3](BasesAndQuals( T G G G G G G G . . G G G G G G G T A A G G G , 7,8,33,7,2,33,16,17,2,2,6,5,35,2,33,22,18,16,25,33,32,16,18,, 7,8,33,7,2,33,16,17,2,2,6,5,35,2,33,22,18,16,25,33,32,16,18,)) 0s passed
eamssParsingTestNoGSeries[4](BasesAndQuals( T A C , 25,16,16,, 25,16,16,)) 0s passed
eamssParsingTestNoGSeries[5](BasesAndQuals( T A C G G . . T C C C C T T T G G G A T G C A T A C G G . . T C C C C T T T G G G A T G C A , 25,16,16,33,22,2,2,33,35,3,31,38,22,19,25,16,16,31,30,2,2,33,26,3,31,38,22,19,2,2,30,27,28,16,2,2,30,16,19,21,22,17,19,16,16,16,, 25,16,16,33,22,2,2,33,35,3,31,38,22,19,25,16,16,31,30,2,2,33,26,3,31,38,22,19,2,2,30,27,28,16,2,2,30,16,19,21,22,17,19,16,16,16,)) 0s passed
eamssParsingTestNoGSeries[6](BasesAndQuals( G G G G G G G G G , 13,7,35,32,2,16,33,14,19,, 13,7,35,32,2,16,33,2,2,)) 0.001s passed
eamssParsingTestNoGSeries[7](BasesAndQuals( G G G G G G G G G , 13,7,35,33,18,2,6,8,33,, 13,7,35,33,2,2,2,2,2,)) 0s passed
eamssParsingTestNoGSeries[8](BasesAndQuals( A C C C C C C C C C C C T G G C T A A , 7,8,33,7,2,33,16,17,19,32,33,5,8,2,2,2,33,16,25,, 7,8,33,7,2,33,16,17,19,32,33,2,2,2,2,2,2,2,2,)) 0s passed
eamssParsingTestNoGSeries[9](BasesAndQuals( T G G G G G G G . . G G G G G G G T A A G G G , 7,8,33,7,2,33,16,17,2,2,6,5,35,2,33,30,13,16,7,2,2,16,18,, 7,8,33,7,2,33,16,17,2,2,6,5,35,2,33,30,2,2,2,2,2,2,2,)) 0s passed
eamssParsingTestWithGSeries[0](BasesAndQuals( A C G G T G G G G G G G G G A C T , 7,8,33,7,12,33,16,17,2,2,32,35,35,35,2,15,9,, 7,8,33,7,12,2,2,2,2,2,2,2,2,2,2,2,2,)) 0s passed
eamssParsingTestWithGSeries[1](BasesAndQuals( A C G G T G G G G G G G G G A C T , 7,8,2,7,2,2,16,17,2,2,32,35,35,35,2,15,9,, 2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,)) 0s passed
eamssParsingTestWithGSeries[2](BasesAndQuals( A C G G T G G G G G G G G G A C T , 7,8,2,7,2,2,16,17,2,2,32,35,35,35,33,15,9,, 7,8,2,7,2,2,16,17,2,2,32,35,35,35,33,2,2,)) 0s passed
eamssParsingTestWithGSeries[3](BasesAndQuals( A C C G C C G G G G G G G G G G T T A , 33,31,29,32,28,27,30,18,18,18,18,19,19,19,33,18,9,9,19,, 33,31,29,32,28,27,2,2,2,2,2,2,2,2,2,2,2,2,2,)) 0s passed
eamssParsingTestWithGSeries[4](BasesAndQuals( A C C G C C G G G G G G G G G G T T A , 33,31,29,32,28,27,30,18,18,18,18,19,19,19,33,18,33,32,34,, 33,31,29,32,28,27,30,18,18,18,18,19,19,19,33,18,33,32,34,)) 0s passed
eamssParsingTestWithGSeries[5](BasesAndQuals( A C C G C C G G G G A G G G G G T T A , 33,31,29,32,28,27,30,18,18,18,18,19,19,19,33,18,9,9,19,, 33,31,29,32,28,27,2,2,2,2,2,2,2,2,2,2,2,2,2,)) 0s passed
eamssParsingTestWithGSeries[6](BasesAndQuals( A C G G G C G G G G G G G G G G T T A , 33,31,29,32,28,16,33,18,18,18,18,19,19,19,33,18,3,9,19,, 33,31,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,)) 0.001s passed
eamssParsingTestWithGSeries[7](BasesAndQuals( A C G G C C G G G G G G G G G G G G G , 33,31,29,32,28,16,33,18,18,18,18,19,19,19,33,34,33,33,3,, 33,31,29,32,28,16,2,2,2,2,2,2,2,2,2,2,2,2,2,)) 0s passed
eamssParsingTestWithGSeries[8](BasesAndQuals( A C G G C C G G G G G G G G G G G G G T A C T T G G G G G G G G G G G G G , 33,31,29,32,28,16,33,18,18,18,18,19,19,19,33,34,33,33,3,33,34,2,4,8,33,7,35,15,16,31,30,38,16,15,22,29,25,, 33,31,29,32,28,16,33,18,18,18,18,19,19,19,33,34,33,33,3,33,34,2,4,8,33,7,35,15,16,31,30,38,16,15,22,29,25,)) 0s passed
fullBclParserTestWBadDeletedSkips[0]([I@fd9e5dc, 180, -1, -1, -1) 0.014s passed
fullBclParserTestWBadDeletedSkips[1]([I@44d5b826, 180, -1, -1, -1) 0.013s passed
fullBclParserTestWBadDeletedSkips[2]([I@50dd7208, 120, -1, -1, -1) 0.012s passed
fullBclParserTestWBadDeletedSkips[3]([I@63505f01, 120, -1, -1, -1) 0.012s passed
fullBclParserTestWBadDeletedSkips[4]([I@4e4129e8, 60, -1, -1, -1) 0.016s passed
fullBclParserTestWBadDeletedSkips[5]([I@4bd6f25d, 206, 25, 0, 0) 0.012s passed
fullBclParserTestWBadDeletedSkips[6]([I@432400a7, 206, 25, 0, 0) 0.013s passed
fullBclParserTestWBadDeletedSkips[7]([I@6d1351b1, 80, 19, 0, 1) 0.014s passed
fullBclParserTestWBadDeletedSkips[8]([I@616e2add, 156, 35, 0, 0) 0.016s passed
fullBclParserTestWBadDeletedSkips[9]([I@5f0bb452, 66, 5, 0, 0) 0.013s passed
fullBclParserTestWDeletedSkips[0]([I@2c747dab, 180, -1, -1, -1) 0.013s passed
fullBclParserTestWDeletedSkips[1]([I@11b362d0, 180, -1, -1, -1) 0.013s passed
fullBclParserTestWDeletedSkips[2]([I@46a06019, 120, -1, -1, -1) 0.013s passed
fullBclParserTestWDeletedSkips[3]([I@18ad0eaf, 120, -1, -1, -1) 0.012s passed
fullBclParserTestWDeletedSkips[4]([I@22ac5f0e, 60, -1, -1, -1) 0.012s passed
fullBclParserTestWDeletedSkips[5]([I@52d88eb2, 206, 25, 0, 0) 0.013s passed
fullBclParserTestWDeletedSkips[6]([I@3ff20809, 206, 25, 0, 0) 0.013s passed
fullBclParserTestWDeletedSkips[7]([I@abb7262, 80, 19, 0, 1) 0.013s passed
fullBclParserTestWDeletedSkips[8]([I@696ad5ba, 156, 35, 0, 0) 0.013s passed
fullBclParserTestWDeletedSkips[9]([I@221bbc97, 66, 5, 0, 0) 0.013s passed
fullBclParserTestWPartiallyDeletedSkips[0]([I@621228bc, 180, -1, -1, -1) 0.014s passed
fullBclParserTestWPartiallyDeletedSkips[1]([I@79d35aec, 180, -1, -1, -1) 0.017s passed
fullBclParserTestWPartiallyDeletedSkips[2]([I@1ab2fa, 120, -1, -1, -1) 0.014s passed
fullBclParserTestWPartiallyDeletedSkips[3]([I@7838c8e8, 120, -1, -1, -1) 0.014s passed
fullBclParserTestWPartiallyDeletedSkips[4]([I@2f43fd36, 60, -1, -1, -1) 0.015s passed
fullBclParserTestWPartiallyDeletedSkips[5]([I@75133e4c, 206, 25, 0, 0) 0.017s passed
fullBclParserTestWPartiallyDeletedSkips[6]([I@675f4ce5, 206, 25, 0, 0) 0.013s passed
fullBclParserTestWPartiallyDeletedSkips[7]([I@565fc860, 80, 19, 0, 1) 0.013s passed
fullBclParserTestWPartiallyDeletedSkips[8]([I@31ce44d0, 156, 35, 0, 0) 0.013s passed
fullBclParserTestWPartiallyDeletedSkips[9]([I@3080e6df, 66, 5, 0, 0) 0.013s passed
fullBclParserTestWSkips[0]([I@75abc74, 180, -1, -1, -1) 0.002s passed
fullBclParserTestWSkips[1]([I@95d05dd, 180, -1, -1, -1) 0.002s passed
fullBclParserTestWSkips[2]([I@13c8e7bc, 120, -1, -1, -1) 0.002s passed
fullBclParserTestWSkips[3]([I@290b7ab3, 120, -1, -1, -1) 0.003s passed
fullBclParserTestWSkips[4]([I@2605bd47, 60, -1, -1, -1) 0.002s passed
fullBclParserTestWSkips[5]([I@535b0905, 206, 25, 0, 0) 0.003s passed
fullBclParserTestWSkips[6]([I@846c1f1, 206, 25, 0, 0) 0.004s passed
fullBclParserTestWSkips[7]([I@1b3afd42, 80, 19, 0, 1) 0.003s passed
fullBclParserTestWSkips[8]([I@33231463, 156, 35, 0, 0) 0.003s passed
fullBclParserTestWSkips[9]([I@79f03daa, 66, 5, 0, 0) 0.002s passed
fullBclParserTest[0]([I@426ee9fa, 180, -1, -1, -1) 0.012s passed
fullBclParserTest[1]([I@7ec21361, 180, -1, -1, -1) 0.011s passed
fullBclParserTest[2]([I@275b0f6c, 120, -1, -1, -1) 0.010s passed
fullBclParserTest[3]([I@58462158, 120, -1, -1, -1) 0.007s passed
fullBclParserTest[4]([I@69f5d88, 60, -1, -1, -1) 0.006s passed
fullBclParserTest[5]([I@52d93cf4, 206, 25, 0, 0) 0.010s passed
fullBclParserTest[6]([I@5782756d, 206, 25, 0, 0) 0.010s passed
fullBclParserTest[7]([I@133507d3, 80, 19, 0, 1) 0.007s passed
fullBclParserTest[8]([I@1462141b, 156, 35, 0, 0) 0.008s passed
fullBclParserTest[9]([I@226ac835, 66, 5, 0, 0) 0.007s passed