Class picard.illumina.IlluminaLaneMetricsCollectorTest

all > picard.illumina > IlluminaLaneMetricsCollectorTest
12

tests
0

failures
0

ignored
0.461s

duration
100%

successful

Tests

Test Duration Result
testCollectIlluminaLaneMetrics[0](A7LE0, 25T8B8B25T) 0.014s passed
testCollectIlluminaLaneMetrics[1](C2MFAACXX, 95T101T) 0.032s passed
testCollectIlluminaLaneMetrics[2](H7BATADXX, 76T8B76T) 0.009s passed
testCollectIlluminaLaneMetrics[3](H7H7RADXX, 101T8B8B101T) 0.010s passed
testCollectIlluminaLaneMetrics[4](A67HY, 8B8B) 0.005s passed
testCollectIlluminaLaneMetrics[5](NovaSeq, 151T8B8B151T) 0.289s passed
testMismatchedMetricsVersions 0.002s passed
testMissingPhasingValuesSilent 0.024s passed
testMissingPhasingValuesStrict 0.007s passed
testWriteLaneMetrics[0](130321_SL-MAK_0035_FC000000000-A306B) 0.006s passed
testWriteLaneMetrics[1](130318_SL-HBB_0226_BFCC1WYMACXX) 0.055s passed
testWriteLaneMetrics[2](130401_SL-HAC_0022_BH07PBADXX) 0.008s passed

Standard error

INFO	2025-04-24 13:03:43	IlluminaLaneMetricsCollector	Writing 1 lane metrics to /tmp/illuminaLaneMetricsCollectorTest3921301986180993144/test.illumina_lane_metrics ...
INFO	2025-04-24 13:03:43	IlluminaLaneMetricsCollector	Writing 2 lane metrics to /tmp/illuminaLaneMetricsCollectorTest3921301986180993144/test.illumina_phasing_metrics ...
INFO	2025-04-24 13:03:43	IlluminaLaneMetricsCollector	Writing 1 lane metrics to /tmp/illuminaLaneMetricsCollectorTest3983853937398711226/test.illumina_lane_metrics ...
INFO	2025-04-24 13:03:43	IlluminaLaneMetricsCollector	Writing 2 lane metrics to /tmp/illuminaLaneMetricsCollectorTest3983853937398711226/test.illumina_phasing_metrics ...
INFO	2025-04-24 13:03:43	IlluminaLaneMetricsCollector	Writing 8 lane metrics to /tmp/illuminaLaneMetricsCollectorTest1452758766158103223/test.illumina_lane_metrics ...
INFO	2025-04-24 13:03:43	IlluminaLaneMetricsCollector	Writing 16 lane metrics to /tmp/illuminaLaneMetricsCollectorTest1452758766158103223/test.illumina_phasing_metrics ...
INFO	2025-04-24 13:03:43	IlluminaLaneMetricsCollector	Writing 8 lane metrics to /tmp/illuminaLaneMetricsCollectorTest17638886738135760097/test.illumina_lane_metrics ...
INFO	2025-04-24 13:03:43	IlluminaLaneMetricsCollector	Writing 16 lane metrics to /tmp/illuminaLaneMetricsCollectorTest17638886738135760097/test.illumina_phasing_metrics ...
INFO	2025-04-24 13:03:43	IlluminaLaneMetricsCollector	Writing 2 lane metrics to /tmp/illuminaLaneMetricsCollectorTest6475210228003196095/test.illumina_lane_metrics ...
INFO	2025-04-24 13:03:43	IlluminaLaneMetricsCollector	Writing 4 lane metrics to /tmp/illuminaLaneMetricsCollectorTest6475210228003196095/test.illumina_phasing_metrics ...
INFO	2025-04-24 13:03:43	IlluminaLaneMetricsCollector	Writing 2 lane metrics to /tmp/illuminaLaneMetricsCollectorTest12683637053226834357/test.illumina_lane_metrics ...
INFO	2025-04-24 13:03:43	IlluminaLaneMetricsCollector	Writing 4 lane metrics to /tmp/illuminaLaneMetricsCollectorTest12683637053226834357/test.illumina_phasing_metrics ...
INFO	2025-04-24 13:03:43	IlluminaLaneMetricsCollector	Writing 2 lane metrics to /tmp/illuminaLaneMetricsCollectorTest5294866004156025183/test.illumina_lane_metrics ...
INFO	2025-04-24 13:03:43	IlluminaLaneMetricsCollector	Writing 4 lane metrics to /tmp/illuminaLaneMetricsCollectorTest5294866004156025183/test.illumina_phasing_metrics ...
INFO	2025-04-24 13:03:43	IlluminaLaneMetricsCollector	Writing 2 lane metrics to /tmp/illuminaLaneMetricsCollectorTest5993151956613510950/test.illumina_lane_metrics ...
INFO	2025-04-24 13:03:43	IlluminaLaneMetricsCollector	Writing 4 lane metrics to /tmp/illuminaLaneMetricsCollectorTest5993151956613510950/test.illumina_phasing_metrics ...
INFO	2025-04-24 13:03:43	IlluminaLaneMetricsCollector	Writing 1 lane metrics to /tmp/illuminaLaneMetricsCollectorTest14140315341033422777/test.illumina_lane_metrics ...
INFO	2025-04-24 13:03:43	IlluminaLaneMetricsCollector	Writing 0 lane metrics to /tmp/illuminaLaneMetricsCollectorTest14140315341033422777/test.illumina_phasing_metrics ...
INFO	2025-04-24 13:03:43	IlluminaLaneMetricsCollector	Writing 1 lane metrics to /tmp/illuminaLaneMetricsCollectorTest7847661454834393785/test.illumina_lane_metrics ...
INFO	2025-04-24 13:03:43	IlluminaLaneMetricsCollector	Writing 0 lane metrics to /tmp/illuminaLaneMetricsCollectorTest7847661454834393785/test.illumina_phasing_metrics ...
INFO	2025-04-24 13:03:44	IlluminaLaneMetricsCollector	Writing 2 lane metrics to /tmp/illuminaLaneMetricsCollectorTest15601194405856358329/test.illumina_lane_metrics ...
INFO	2025-04-24 13:03:44	IlluminaLaneMetricsCollector	Writing 4 lane metrics to /tmp/illuminaLaneMetricsCollectorTest15601194405856358329/test.illumina_phasing_metrics ...
INFO	2025-04-24 13:03:44	IlluminaLaneMetricsCollector	Writing 2 lane metrics to /tmp/illuminaLaneMetricsCollectorTest5515052030794187421/test.illumina_lane_metrics ...
INFO	2025-04-24 13:03:44	IlluminaLaneMetricsCollector	Writing 4 lane metrics to /tmp/illuminaLaneMetricsCollectorTest5515052030794187421/test.illumina_phasing_metrics ...
ERROR	2025-04-24 13:03:44	IlluminaLaneMetricsCollector	File /mounts/lovelace/software/picard/picard/testdata/picard/illumina/IlluminaLaneMetricsCollectorTest/metrics-mismatch/InterOp/C25.1/TileMetricsOut.bin version 3 does not match expected version 2.
INFO	2025-04-24 13:03:44	IlluminaLaneMetricsCollector	Writing 4 lane metrics to /tmp/illuminaLaneMetricsCollectorTest15624392040780958833/test.illumina_lane_metrics ...
INFO	2025-04-24 13:03:44	IlluminaLaneMetricsCollector	Writing 8 lane metrics to /tmp/illuminaLaneMetricsCollectorTest15624392040780958833/test.illumina_phasing_metrics ...
INFO	2025-04-24 13:03:44	IlluminaLaneMetricsCollector	Writing 4 lane metrics to /tmp/illuminaLaneMetricsCollectorTest9479531637543696506/test.illumina_lane_metrics ...
INFO	2025-04-24 13:03:44	IlluminaLaneMetricsCollector	Writing 8 lane metrics to /tmp/illuminaLaneMetricsCollectorTest9479531637543696506/test.illumina_phasing_metrics ...
INFO	2025-04-24 13:03:44	IlluminaLaneMetricsCollector	Writing 1 lane metrics to /tmp/illuminaLaneMetricsCollectorTest17042231367023893725/test.illumina_lane_metrics ...
INFO	2025-04-24 13:03:44	IlluminaLaneMetricsCollector	Writing 2 lane metrics to /tmp/illuminaLaneMetricsCollectorTest17042231367023893725/test.illumina_phasing_metrics ...
INFO	2025-04-24 13:03:44	IlluminaLaneMetricsCollector	Writing 1 lane metrics to /tmp/illuminaLaneMetricsCollectorTest17691552646761497266/test.illumina_lane_metrics ...
INFO	2025-04-24 13:03:44	IlluminaLaneMetricsCollector	Writing 2 lane metrics to /tmp/illuminaLaneMetricsCollectorTest17691552646761497266/test.illumina_phasing_metrics ...
INFO	2025-04-24 13:03:44	IlluminaLaneMetricsCollector	Writing 8 lane metrics to /tmp/illuminaLaneMetricsCollectorTest11709194883981051860/test.illumina_lane_metrics ...
INFO	2025-04-24 13:03:44	IlluminaLaneMetricsCollector	Writing 16 lane metrics to /tmp/illuminaLaneMetricsCollectorTest11709194883981051860/test.illumina_phasing_metrics ...
INFO	2025-04-24 13:03:44	IlluminaLaneMetricsCollector	Writing 8 lane metrics to /tmp/illuminaLaneMetricsCollectorTest9520863918939102483/test.illumina_lane_metrics ...
INFO	2025-04-24 13:03:44	IlluminaLaneMetricsCollector	Writing 16 lane metrics to /tmp/illuminaLaneMetricsCollectorTest9520863918939102483/test.illumina_phasing_metrics ...
INFO	2025-04-24 13:03:44	IlluminaLaneMetricsCollector	Writing 2 lane metrics to /tmp/illuminaLaneMetricsCollectorTest16060204007897684792/test.illumina_lane_metrics ...
INFO	2025-04-24 13:03:44	IlluminaLaneMetricsCollector	Writing 4 lane metrics to /tmp/illuminaLaneMetricsCollectorTest16060204007897684792/test.illumina_phasing_metrics ...
INFO	2025-04-24 13:03:44	IlluminaLaneMetricsCollector	Writing 2 lane metrics to /tmp/illuminaLaneMetricsCollectorTest15266223832578908557/test.illumina_lane_metrics ...
INFO	2025-04-24 13:03:44	IlluminaLaneMetricsCollector	Writing 4 lane metrics to /tmp/illuminaLaneMetricsCollectorTest15266223832578908557/test.illumina_phasing_metrics ...