Class picard.arrays.CollectArraysVariantCallingMetricsTest

67

tests

0

failures

0

ignored

0.354s

duration

100%

successful

Tests

Test Duration Result
testCollectArraysVariantCallingMetricsOverkillTest[0](7991775143_R01C01, 636, 1, true, F, F, true, 3.0.0, 1.0.0.0, IlluminaGenotypingArray_v1.5, 0.999) 0.175s passed
testCollectArraysVariantCallingMetricsOverkillTest[1](7991775143_R01C01_wo_optional_fields, 631, null, false, M, N, false, 2.0.0.137, null, null, null) 0.086s passed
testCollectArraysVariantCallingMetricsTwoSamples 0.088s passed
testSexConcordance[0](Male, Male, Male, true) 0s passed
testSexConcordance[10](Male, Unknown, Unknown, false) 0s passed
testSexConcordance[11](Male, Unknown, NotReported, false) 0s passed
testSexConcordance[12](Male, NotReported, Male, true) 0s passed
testSexConcordance[13](Male, NotReported, Female, false) 0s passed
testSexConcordance[14](Male, NotReported, Unknown, false) 0s passed
testSexConcordance[15](Male, NotReported, NotReported, false) 0s passed
testSexConcordance[16](Female, Male, Male, false) 0s passed
testSexConcordance[17](Female, Male, Female, false) 0s passed
testSexConcordance[18](Female, Male, Unknown, false) 0s passed
testSexConcordance[19](Female, Male, NotReported, false) 0.001s passed
testSexConcordance[1](Male, Male, Female, false) 0s passed
testSexConcordance[20](Female, Female, Male, false) 0s passed
testSexConcordance[21](Female, Female, Female, true) 0s passed
testSexConcordance[22](Female, Female, Unknown, true) 0s passed
testSexConcordance[23](Female, Female, NotReported, true) 0s passed
testSexConcordance[24](Female, Unknown, Male, false) 0s passed
testSexConcordance[25](Female, Unknown, Female, true) 0s passed
testSexConcordance[26](Female, Unknown, Unknown, false) 0s passed
testSexConcordance[27](Female, Unknown, NotReported, false) 0s passed
testSexConcordance[28](Female, NotReported, Male, false) 0s passed
testSexConcordance[29](Female, NotReported, Female, true) 0s passed
testSexConcordance[2](Male, Male, Unknown, true) 0s passed
testSexConcordance[30](Female, NotReported, Unknown, false) 0s passed
testSexConcordance[31](Female, NotReported, NotReported, false) 0.001s passed
testSexConcordance[32](Unknown, Male, Male, true) 0s passed
testSexConcordance[33](Unknown, Male, Female, false) 0s passed
testSexConcordance[34](Unknown, Male, Unknown, false) 0s passed
testSexConcordance[35](Unknown, Male, NotReported, false) 0s passed
testSexConcordance[36](Unknown, Female, Male, false) 0s passed
testSexConcordance[37](Unknown, Female, Female, true) 0s passed
testSexConcordance[38](Unknown, Female, Unknown, false) 0.001s passed
testSexConcordance[39](Unknown, Female, NotReported, false) 0s passed
testSexConcordance[3](Male, Male, NotReported, true) 0s passed
testSexConcordance[40](Unknown, Unknown, Male, false) 0s passed
testSexConcordance[41](Unknown, Unknown, Female, false) 0s passed
testSexConcordance[42](Unknown, Unknown, Unknown, false) 0s passed
testSexConcordance[43](Unknown, Unknown, NotReported, false) 0s passed
testSexConcordance[44](Unknown, NotReported, Male, false) 0s passed
testSexConcordance[45](Unknown, NotReported, Female, false) 0s passed
testSexConcordance[46](Unknown, NotReported, Unknown, false) 0s passed
testSexConcordance[47](Unknown, NotReported, NotReported, false) 0s passed
testSexConcordance[48](NotReported, Male, Male, true) 0s passed
testSexConcordance[49](NotReported, Male, Female, false) 0s passed
testSexConcordance[4](Male, Female, Male, false) 0s passed
testSexConcordance[50](NotReported, Male, Unknown, false) 0s passed
testSexConcordance[51](NotReported, Male, NotReported, false) 0.001s passed
testSexConcordance[52](NotReported, Female, Male, false) 0s passed
testSexConcordance[53](NotReported, Female, Female, true) 0s passed
testSexConcordance[54](NotReported, Female, Unknown, false) 0s passed
testSexConcordance[55](NotReported, Female, NotReported, false) 0s passed
testSexConcordance[56](NotReported, Unknown, Male, false) 0s passed
testSexConcordance[57](NotReported, Unknown, Female, false) 0s passed
testSexConcordance[58](NotReported, Unknown, Unknown, false) 0.001s passed
testSexConcordance[59](NotReported, Unknown, NotReported, false) 0s passed
testSexConcordance[5](Male, Female, Female, false) 0s passed
testSexConcordance[60](NotReported, NotReported, Male, false) 0s passed
testSexConcordance[61](NotReported, NotReported, Female, false) 0s passed
testSexConcordance[62](NotReported, NotReported, Unknown, false) 0s passed
testSexConcordance[63](NotReported, NotReported, NotReported, false) 0s passed
testSexConcordance[6](Male, Female, Unknown, false) 0s passed
testSexConcordance[7](Male, Female, NotReported, false) 0s passed
testSexConcordance[8](Male, Unknown, Male, true) 0s passed
testSexConcordance[9](Male, Unknown, Female, false) 0s passed

Standard error

INFO	2025-04-24 13:00:13	CollectArraysVariantCallingMetrics	Loading dbSNP file.
INFO	2025-04-24 13:00:13	CollectArraysVariantCallingMetrics	Starting iteration of variants.
INFO	2025-04-24 13:00:13	CollectArraysVariantCallingMetrics	Loading dbSNP file.
INFO	2025-04-24 13:00:13	CollectArraysVariantCallingMetrics	Starting iteration of variants.
INFO	2025-04-24 13:00:13	CollectArraysVariantCallingMetrics	Loading dbSNP file.
INFO	2025-04-24 13:00:13	CollectArraysVariantCallingMetrics	Starting iteration of variants.