Class picard.analysis.WgsMetricsTest

all > picard.analysis > WgsMetricsTest
9

tests
0

failures
0

ignored
0.072s

duration
100%

successful

Tests

Test Duration Result
testMergeOverlappingIntervals 0.013s passed
testWgsMetricsMerge[0](GENOME_TERRITORY 0 MEAN_COVERAGE ? SD_COVERAGE -0 MEDIAN_COVERAGE 0 MAD_COVERAGE 0 PCT_EXC_ADAPTER 0 PCT_EXC_MAPQ 0 PCT_EXC_DUPE 0 PCT_EXC_UNPAIRED 0 PCT_EXC_BASEQ 0 PCT_EXC_OVERLAP 0 PCT_EXC_CAPPED 0 PCT_EXC_TOTAL 0 PCT_1X ? PCT_5X ? PCT_10X ? PCT_15X ? PCT_20X ? PCT_25X ? PCT_30X ? PCT_40X ? PCT_50X ? PCT_60X ? PCT_70X ? PCT_80X ? PCT_90X ? PCT_100X ? FOLD_80_BASE_PENALTY 0 FOLD_90_BASE_PENALTY 0 FOLD_95_BASE_PENALTY 0 HET_SNP_SENSITIVITY 0 HET_SNP_Q 0 , GENOME_TERRITORY 0 MEAN_COVERAGE ? SD_COVERAGE -0 MEDIAN_COVERAGE 0 MAD_COVERAGE 0 PCT_EXC_ADAPTER 0 PCT_EXC_MAPQ 0 PCT_EXC_DUPE 0 PCT_EXC_UNPAIRED 0 PCT_EXC_BASEQ 0 PCT_EXC_OVERLAP 0 PCT_EXC_CAPPED 0 PCT_EXC_TOTAL 0 PCT_1X ? PCT_5X ? PCT_10X ? PCT_15X ? PCT_20X ? PCT_25X ? PCT_30X ? PCT_40X ? PCT_50X ? PCT_60X ? PCT_70X ? PCT_80X ? PCT_90X ? PCT_100X ? FOLD_80_BASE_PENALTY 0 FOLD_90_BASE_PENALTY 0 FOLD_95_BASE_PENALTY 0 HET_SNP_SENSITIVITY 0 HET_SNP_Q 0 , GENOME_TERRITORY 0 MEAN_COVERAGE ? SD_COVERAGE -0 MEDIAN_COVERAGE 0 MAD_COVERAGE 0 PCT_EXC_ADAPTER 0 PCT_EXC_MAPQ 0 PCT_EXC_DUPE 0 PCT_EXC_UNPAIRED 0 PCT_EXC_BASEQ 0 PCT_EXC_OVERLAP 0 PCT_EXC_CAPPED 0 PCT_EXC_TOTAL 0 PCT_1X ? PCT_5X ? PCT_10X ? PCT_15X ? PCT_20X ? PCT_25X ? PCT_30X ? PCT_40X ? PCT_50X ? PCT_60X ? PCT_70X ? PCT_80X ? PCT_90X ? PCT_100X ? FOLD_80_BASE_PENALTY 0 FOLD_90_BASE_PENALTY 0 FOLD_95_BASE_PENALTY 0 HET_SNP_SENSITIVITY 0 HET_SNP_Q 0 ) 0.009s passed
testWgsMetricsMerge[1](GENOME_TERRITORY 0 MEAN_COVERAGE ? SD_COVERAGE -0 MEDIAN_COVERAGE 0 MAD_COVERAGE 0 PCT_EXC_ADAPTER 0 PCT_EXC_MAPQ 0 PCT_EXC_DUPE 0 PCT_EXC_UNPAIRED 0 PCT_EXC_BASEQ 0 PCT_EXC_OVERLAP 0 PCT_EXC_CAPPED 0 PCT_EXC_TOTAL 0 PCT_1X ? PCT_5X ? PCT_10X ? PCT_15X ? PCT_20X ? PCT_25X ? PCT_30X ? PCT_40X ? PCT_50X ? PCT_60X ? PCT_70X ? PCT_80X ? PCT_90X ? PCT_100X ? FOLD_80_BASE_PENALTY 0 FOLD_90_BASE_PENALTY 0 FOLD_95_BASE_PENALTY 0 HET_SNP_SENSITIVITY 0 HET_SNP_Q 0 , GENOME_TERRITORY 100000 MEAN_COVERAGE 1 SD_COVERAGE 0 MEDIAN_COVERAGE 1 MAD_COVERAGE 0 PCT_EXC_ADAPTER 0.00005 PCT_EXC_MAPQ 0.0001 PCT_EXC_DUPE 0.0002 PCT_EXC_UNPAIRED 0.0003 PCT_EXC_BASEQ 0.0004 PCT_EXC_OVERLAP 0.0005 PCT_EXC_CAPPED 0.0006 PCT_EXC_TOTAL 0.002145 PCT_1X 1 PCT_5X 0 PCT_10X 0 PCT_15X 0 PCT_20X 0 PCT_25X 0 PCT_30X 0 PCT_40X 0 PCT_50X 0 PCT_60X 0 PCT_70X 0 PCT_80X 0 PCT_90X 0 PCT_100X 0 FOLD_80_BASE_PENALTY 1 FOLD_90_BASE_PENALTY 1 FOLD_95_BASE_PENALTY 1 HET_SNP_SENSITIVITY 0 HET_SNP_Q 0 , GENOME_TERRITORY 100000 MEAN_COVERAGE 1 SD_COVERAGE 0 MEDIAN_COVERAGE 1 MAD_COVERAGE 0 PCT_EXC_ADAPTER 0.00005 PCT_EXC_MAPQ 0.0001 PCT_EXC_DUPE 0.0002 PCT_EXC_UNPAIRED 0.0003 PCT_EXC_BASEQ 0.0004 PCT_EXC_OVERLAP 0.0005 PCT_EXC_CAPPED 0.0006 PCT_EXC_TOTAL 0.002145 PCT_1X 1 PCT_5X 0 PCT_10X 0 PCT_15X 0 PCT_20X 0 PCT_25X 0 PCT_30X 0 PCT_40X 0 PCT_50X 0 PCT_60X 0 PCT_70X 0 PCT_80X 0 PCT_90X 0 PCT_100X 0 FOLD_80_BASE_PENALTY 1 FOLD_90_BASE_PENALTY 1 FOLD_95_BASE_PENALTY 1 HET_SNP_SENSITIVITY 0 HET_SNP_Q 0 ) 0.008s passed
testWgsMetricsMerge[2](GENOME_TERRITORY 100000 MEAN_COVERAGE 1 SD_COVERAGE 0 MEDIAN_COVERAGE 1 MAD_COVERAGE 0 PCT_EXC_ADAPTER 0.00005 PCT_EXC_MAPQ 0.0001 PCT_EXC_DUPE 0.0002 PCT_EXC_UNPAIRED 0.0003 PCT_EXC_BASEQ 0.0004 PCT_EXC_OVERLAP 0.0005 PCT_EXC_CAPPED 0.0006 PCT_EXC_TOTAL 0.002145 PCT_1X 1 PCT_5X 0 PCT_10X 0 PCT_15X 0 PCT_20X 0 PCT_25X 0 PCT_30X 0 PCT_40X 0 PCT_50X 0 PCT_60X 0 PCT_70X 0 PCT_80X 0 PCT_90X 0 PCT_100X 0 FOLD_80_BASE_PENALTY 1 FOLD_90_BASE_PENALTY 1 FOLD_95_BASE_PENALTY 1 HET_SNP_SENSITIVITY 0 HET_SNP_Q 0 , GENOME_TERRITORY 0 MEAN_COVERAGE ? SD_COVERAGE -0 MEDIAN_COVERAGE 0 MAD_COVERAGE 0 PCT_EXC_ADAPTER 0 PCT_EXC_MAPQ 0 PCT_EXC_DUPE 0 PCT_EXC_UNPAIRED 0 PCT_EXC_BASEQ 0 PCT_EXC_OVERLAP 0 PCT_EXC_CAPPED 0 PCT_EXC_TOTAL 0 PCT_1X ? PCT_5X ? PCT_10X ? PCT_15X ? PCT_20X ? PCT_25X ? PCT_30X ? PCT_40X ? PCT_50X ? PCT_60X ? PCT_70X ? PCT_80X ? PCT_90X ? PCT_100X ? FOLD_80_BASE_PENALTY 0 FOLD_90_BASE_PENALTY 0 FOLD_95_BASE_PENALTY 0 HET_SNP_SENSITIVITY 0 HET_SNP_Q 0 , GENOME_TERRITORY 100000 MEAN_COVERAGE 1 SD_COVERAGE 0 MEDIAN_COVERAGE 1 MAD_COVERAGE 0 PCT_EXC_ADAPTER 0.00005 PCT_EXC_MAPQ 0.0001 PCT_EXC_DUPE 0.0002 PCT_EXC_UNPAIRED 0.0003 PCT_EXC_BASEQ 0.0004 PCT_EXC_OVERLAP 0.0005 PCT_EXC_CAPPED 0.0006 PCT_EXC_TOTAL 0.002145 PCT_1X 1 PCT_5X 0 PCT_10X 0 PCT_15X 0 PCT_20X 0 PCT_25X 0 PCT_30X 0 PCT_40X 0 PCT_50X 0 PCT_60X 0 PCT_70X 0 PCT_80X 0 PCT_90X 0 PCT_100X 0 FOLD_80_BASE_PENALTY 1 FOLD_90_BASE_PENALTY 1 FOLD_95_BASE_PENALTY 1 HET_SNP_SENSITIVITY 0 HET_SNP_Q 0 ) 0.008s passed
testWgsMetricsMerge[3](GENOME_TERRITORY 100000 MEAN_COVERAGE 1 SD_COVERAGE 0 MEDIAN_COVERAGE 1 MAD_COVERAGE 0 PCT_EXC_ADAPTER 0.00005 PCT_EXC_MAPQ 0.0001 PCT_EXC_DUPE 0.0002 PCT_EXC_UNPAIRED 0.0003 PCT_EXC_BASEQ 0.0004 PCT_EXC_OVERLAP 0.0005 PCT_EXC_CAPPED 0.0006 PCT_EXC_TOTAL 0.002145 PCT_1X 1 PCT_5X 0 PCT_10X 0 PCT_15X 0 PCT_20X 0 PCT_25X 0 PCT_30X 0 PCT_40X 0 PCT_50X 0 PCT_60X 0 PCT_70X 0 PCT_80X 0 PCT_90X 0 PCT_100X 0 FOLD_80_BASE_PENALTY 1 FOLD_90_BASE_PENALTY 1 FOLD_95_BASE_PENALTY 1 HET_SNP_SENSITIVITY 0 HET_SNP_Q 0 , GENOME_TERRITORY 100000 MEAN_COVERAGE 1 SD_COVERAGE 0 MEDIAN_COVERAGE 1 MAD_COVERAGE 0 PCT_EXC_ADAPTER 0.00005 PCT_EXC_MAPQ 0.0001 PCT_EXC_DUPE 0.0002 PCT_EXC_UNPAIRED 0.0003 PCT_EXC_BASEQ 0.0004 PCT_EXC_OVERLAP 0.0005 PCT_EXC_CAPPED 0.0006 PCT_EXC_TOTAL 0.002145 PCT_1X 1 PCT_5X 0 PCT_10X 0 PCT_15X 0 PCT_20X 0 PCT_25X 0 PCT_30X 0 PCT_40X 0 PCT_50X 0 PCT_60X 0 PCT_70X 0 PCT_80X 0 PCT_90X 0 PCT_100X 0 FOLD_80_BASE_PENALTY 1 FOLD_90_BASE_PENALTY 1 FOLD_95_BASE_PENALTY 1 HET_SNP_SENSITIVITY 0 HET_SNP_Q 0 , GENOME_TERRITORY 200000 MEAN_COVERAGE 1 SD_COVERAGE 0 MEDIAN_COVERAGE 1 MAD_COVERAGE 0 PCT_EXC_ADAPTER 0.00005 PCT_EXC_MAPQ 0.0001 PCT_EXC_DUPE 0.0002 PCT_EXC_UNPAIRED 0.0003 PCT_EXC_BASEQ 0.0004 PCT_EXC_OVERLAP 0.0005 PCT_EXC_CAPPED 0.0006 PCT_EXC_TOTAL 0.002145 PCT_1X 1 PCT_5X 0 PCT_10X 0 PCT_15X 0 PCT_20X 0 PCT_25X 0 PCT_30X 0 PCT_40X 0 PCT_50X 0 PCT_60X 0 PCT_70X 0 PCT_80X 0 PCT_90X 0 PCT_100X 0 FOLD_80_BASE_PENALTY 1 FOLD_90_BASE_PENALTY 1 FOLD_95_BASE_PENALTY 1 HET_SNP_SENSITIVITY 0 HET_SNP_Q 0 ) 0.009s passed
testWgsMetricsMerge[4](GENOME_TERRITORY 100000 MEAN_COVERAGE 1 SD_COVERAGE 0 MEDIAN_COVERAGE 1 MAD_COVERAGE 0 PCT_EXC_ADAPTER 0.00005 PCT_EXC_MAPQ 0.0001 PCT_EXC_DUPE 0.0002 PCT_EXC_UNPAIRED 0.0003 PCT_EXC_BASEQ 0.0004 PCT_EXC_OVERLAP 0.0005 PCT_EXC_CAPPED 0.0006 PCT_EXC_TOTAL 0.002145 PCT_1X 1 PCT_5X 0 PCT_10X 0 PCT_15X 0 PCT_20X 0 PCT_25X 0 PCT_30X 0 PCT_40X 0 PCT_50X 0 PCT_60X 0 PCT_70X 0 PCT_80X 0 PCT_90X 0 PCT_100X 0 FOLD_80_BASE_PENALTY 1 FOLD_90_BASE_PENALTY 1 FOLD_95_BASE_PENALTY 1 HET_SNP_SENSITIVITY 0 HET_SNP_Q 0 , GENOME_TERRITORY 200000 MEAN_COVERAGE 1 SD_COVERAGE 0 MEDIAN_COVERAGE 1 MAD_COVERAGE 0 PCT_EXC_ADAPTER 0.00005 PCT_EXC_MAPQ 0.0001 PCT_EXC_DUPE 0.0002 PCT_EXC_UNPAIRED 0.0003 PCT_EXC_BASEQ 0.0004 PCT_EXC_OVERLAP 0.0005 PCT_EXC_CAPPED 0.0006 PCT_EXC_TOTAL 0.002145 PCT_1X 1 PCT_5X 0 PCT_10X 0 PCT_15X 0 PCT_20X 0 PCT_25X 0 PCT_30X 0 PCT_40X 0 PCT_50X 0 PCT_60X 0 PCT_70X 0 PCT_80X 0 PCT_90X 0 PCT_100X 0 FOLD_80_BASE_PENALTY 1 FOLD_90_BASE_PENALTY 1 FOLD_95_BASE_PENALTY 1 HET_SNP_SENSITIVITY 0 HET_SNP_Q 0 , GENOME_TERRITORY 300000 MEAN_COVERAGE 1 SD_COVERAGE 0 MEDIAN_COVERAGE 1 MAD_COVERAGE 0 PCT_EXC_ADAPTER 0.00005 PCT_EXC_MAPQ 0.0001 PCT_EXC_DUPE 0.0002 PCT_EXC_UNPAIRED 0.0003 PCT_EXC_BASEQ 0.0004 PCT_EXC_OVERLAP 0.0005 PCT_EXC_CAPPED 0.0006 PCT_EXC_TOTAL 0.002145 PCT_1X 1 PCT_5X 0 PCT_10X 0 PCT_15X 0 PCT_20X 0 PCT_25X 0 PCT_30X 0 PCT_40X 0 PCT_50X 0 PCT_60X 0 PCT_70X 0 PCT_80X 0 PCT_90X 0 PCT_100X 0 FOLD_80_BASE_PENALTY 1 FOLD_90_BASE_PENALTY 1 FOLD_95_BASE_PENALTY 1 HET_SNP_SENSITIVITY 0 HET_SNP_Q 0 ) 0.008s passed
testWgsMetricsMerge[5](GENOME_TERRITORY 100000 MEAN_COVERAGE 1 SD_COVERAGE 0 MEDIAN_COVERAGE 1 MAD_COVERAGE 0 PCT_EXC_ADAPTER 0.00005 PCT_EXC_MAPQ 0.0001 PCT_EXC_DUPE 0.0002 PCT_EXC_UNPAIRED 0.0003 PCT_EXC_BASEQ 0.0004 PCT_EXC_OVERLAP 0.0005 PCT_EXC_CAPPED 0.0006 PCT_EXC_TOTAL 0.002145 PCT_1X 1 PCT_5X 0 PCT_10X 0 PCT_15X 0 PCT_20X 0 PCT_25X 0 PCT_30X 0 PCT_40X 0 PCT_50X 0 PCT_60X 0 PCT_70X 0 PCT_80X 0 PCT_90X 0 PCT_100X 0 FOLD_80_BASE_PENALTY 1 FOLD_90_BASE_PENALTY 1 FOLD_95_BASE_PENALTY 1 HET_SNP_SENSITIVITY 0 HET_SNP_Q 0 , GENOME_TERRITORY 100000 MEAN_COVERAGE 1 SD_COVERAGE 0 MEDIAN_COVERAGE 1 MAD_COVERAGE 0 PCT_EXC_ADAPTER 0.00005 PCT_EXC_MAPQ 0.0001 PCT_EXC_DUPE 0.0002 PCT_EXC_UNPAIRED 0.0003 PCT_EXC_BASEQ 0.0004 PCT_EXC_OVERLAP 0.0005 PCT_EXC_CAPPED 0.0006 PCT_EXC_TOTAL 0.002145 PCT_1X 1 PCT_5X 0 PCT_10X 0 PCT_15X 0 PCT_20X 0 PCT_25X 0 PCT_30X 0 PCT_40X 0 PCT_50X 0 PCT_60X 0 PCT_70X 0 PCT_80X 0 PCT_90X 0 PCT_100X 0 FOLD_80_BASE_PENALTY 1 FOLD_90_BASE_PENALTY 1 FOLD_95_BASE_PENALTY 1 HET_SNP_SENSITIVITY 0 HET_SNP_Q 0 , GENOME_TERRITORY 200000 MEAN_COVERAGE 1 SD_COVERAGE 0 MEDIAN_COVERAGE 1 MAD_COVERAGE 0 PCT_EXC_ADAPTER 0.00005 PCT_EXC_MAPQ 0.0001 PCT_EXC_DUPE 0.0002 PCT_EXC_UNPAIRED 0.0003 PCT_EXC_BASEQ 0.0004 PCT_EXC_OVERLAP 0.0005 PCT_EXC_CAPPED 0.0006 PCT_EXC_TOTAL 0.002145 PCT_1X 1 PCT_5X 0 PCT_10X 0 PCT_15X 0 PCT_20X 0 PCT_25X 0 PCT_30X 0 PCT_40X 0 PCT_50X 0 PCT_60X 0 PCT_70X 0 PCT_80X 0 PCT_90X 0 PCT_100X 0 FOLD_80_BASE_PENALTY 1 FOLD_90_BASE_PENALTY 1 FOLD_95_BASE_PENALTY 1 HET_SNP_SENSITIVITY 0 HET_SNP_Q 0 ) 0.008s passed
testWgsMetricsMerge[6](GENOME_TERRITORY 100000 MEAN_COVERAGE 1 SD_COVERAGE 0 MEDIAN_COVERAGE 1 MAD_COVERAGE 0 PCT_EXC_ADAPTER 0.00005 PCT_EXC_MAPQ 0.0001 PCT_EXC_DUPE 0.0002 PCT_EXC_UNPAIRED 0.0003 PCT_EXC_BASEQ 0.0004 PCT_EXC_OVERLAP 0.0005 PCT_EXC_CAPPED 0.0006 PCT_EXC_TOTAL 0.002145 PCT_1X 1 PCT_5X 0 PCT_10X 0 PCT_15X 0 PCT_20X 0 PCT_25X 0 PCT_30X 0 PCT_40X 0 PCT_50X 0 PCT_60X 0 PCT_70X 0 PCT_80X 0 PCT_90X 0 PCT_100X 0 FOLD_80_BASE_PENALTY 1 FOLD_90_BASE_PENALTY 1 FOLD_95_BASE_PENALTY 1 HET_SNP_SENSITIVITY 0 HET_SNP_Q 0 , GENOME_TERRITORY 100000 MEAN_COVERAGE 2 SD_COVERAGE 0 MEDIAN_COVERAGE 2 MAD_COVERAGE 0 PCT_EXC_ADAPTER 0.00005 PCT_EXC_MAPQ 0.0001 PCT_EXC_DUPE 0.0002 PCT_EXC_UNPAIRED 0.0003 PCT_EXC_BASEQ 0.0004 PCT_EXC_OVERLAP 0.0005 PCT_EXC_CAPPED 0.0006 PCT_EXC_TOTAL 0.002145 PCT_1X 1 PCT_5X 0 PCT_10X 0 PCT_15X 0 PCT_20X 0 PCT_25X 0 PCT_30X 0 PCT_40X 0 PCT_50X 0 PCT_60X 0 PCT_70X 0 PCT_80X 0 PCT_90X 0 PCT_100X 0 FOLD_80_BASE_PENALTY 1 FOLD_90_BASE_PENALTY 1 FOLD_95_BASE_PENALTY 1 HET_SNP_SENSITIVITY 0 HET_SNP_Q 0 , GENOME_TERRITORY 200000 MEAN_COVERAGE 1.5 SD_COVERAGE 0.500001 MEDIAN_COVERAGE 1.5 MAD_COVERAGE 0.5 PCT_EXC_ADAPTER 0.00005 PCT_EXC_MAPQ 0.0001 PCT_EXC_DUPE 0.0002 PCT_EXC_UNPAIRED 0.0003 PCT_EXC_BASEQ 0.0004 PCT_EXC_OVERLAP 0.0005 PCT_EXC_CAPPED 0.0006 PCT_EXC_TOTAL 0.002145 PCT_1X 1 PCT_5X 0 PCT_10X 0 PCT_15X 0 PCT_20X 0 PCT_25X 0 PCT_30X 0 PCT_40X 0 PCT_50X 0 PCT_60X 0 PCT_70X 0 PCT_80X 0 PCT_90X 0 PCT_100X 0 FOLD_80_BASE_PENALTY 1.5 FOLD_90_BASE_PENALTY 1.5 FOLD_95_BASE_PENALTY 1.5 HET_SNP_SENSITIVITY 0 HET_SNP_Q 0 ) 0.008s passed
testWgsMetricsMerge[7](GENOME_TERRITORY 200000 MEAN_COVERAGE 1.5 SD_COVERAGE 0.500001 MEDIAN_COVERAGE 1.5 MAD_COVERAGE 0.5 PCT_EXC_ADAPTER 0.00005 PCT_EXC_MAPQ 0.0001 PCT_EXC_DUPE 0.0002 PCT_EXC_UNPAIRED 0.0003 PCT_EXC_BASEQ 0.0004 PCT_EXC_OVERLAP 0.0005 PCT_EXC_CAPPED 0.0006 PCT_EXC_TOTAL 0.002145 PCT_1X 1 PCT_5X 0 PCT_10X 0 PCT_15X 0 PCT_20X 0 PCT_25X 0 PCT_30X 0 PCT_40X 0 PCT_50X 0 PCT_60X 0 PCT_70X 0 PCT_80X 0 PCT_90X 0 PCT_100X 0 FOLD_80_BASE_PENALTY 1.5 FOLD_90_BASE_PENALTY 1.5 FOLD_95_BASE_PENALTY 1.5 HET_SNP_SENSITIVITY 0 HET_SNP_Q 0 , GENOME_TERRITORY 200000 MEAN_COVERAGE 1.5 SD_COVERAGE 0.500001 MEDIAN_COVERAGE 1.5 MAD_COVERAGE 0.5 PCT_EXC_ADAPTER 0.00005 PCT_EXC_MAPQ 0.0001 PCT_EXC_DUPE 0.0002 PCT_EXC_UNPAIRED 0.0003 PCT_EXC_BASEQ 0.0004 PCT_EXC_OVERLAP 0.0005 PCT_EXC_CAPPED 0.0006 PCT_EXC_TOTAL 0.002145 PCT_1X 1 PCT_5X 0 PCT_10X 0 PCT_15X 0 PCT_20X 0 PCT_25X 0 PCT_30X 0 PCT_40X 0 PCT_50X 0 PCT_60X 0 PCT_70X 0 PCT_80X 0 PCT_90X 0 PCT_100X 0 FOLD_80_BASE_PENALTY 1.5 FOLD_90_BASE_PENALTY 1.5 FOLD_95_BASE_PENALTY 1.5 HET_SNP_SENSITIVITY 0 HET_SNP_Q 0 , GENOME_TERRITORY 400000 MEAN_COVERAGE 1.5 SD_COVERAGE 0.500001 MEDIAN_COVERAGE 1.5 MAD_COVERAGE 0.5 PCT_EXC_ADAPTER 0.00005 PCT_EXC_MAPQ 0.0001 PCT_EXC_DUPE 0.0002 PCT_EXC_UNPAIRED 0.0003 PCT_EXC_BASEQ 0.0004 PCT_EXC_OVERLAP 0.0005 PCT_EXC_CAPPED 0.0006 PCT_EXC_TOTAL 0.002145 PCT_1X 1 PCT_5X 0 PCT_10X 0 PCT_15X 0 PCT_20X 0 PCT_25X 0 PCT_30X 0 PCT_40X 0 PCT_50X 0 PCT_60X 0 PCT_70X 0 PCT_80X 0 PCT_90X 0 PCT_100X 0 FOLD_80_BASE_PENALTY 1.5 FOLD_90_BASE_PENALTY 1.5 FOLD_95_BASE_PENALTY 1.5 HET_SNP_SENSITIVITY 0 HET_SNP_Q 0 ) 0.001s passed