Class picard.analysis.TheoreticalSensitivityTest
|
100%
successful |
Tests
| Test | Duration | Result |
|---|---|---|
| testCallingThreshold[0](100, 10, 200, 0.1, 5.8, true) | 0s | passed |
| testCallingThreshold[1](100, 10, 200, 0.1, 5.9, false) | 0s | passed |
| testCallingThreshold[2](100, 10, 210, 0.1, 6.2, true) | 0s | passed |
| testCallingThreshold[3](100, 10, 200, 0.1, 6.2, false) | 0s | passed |
| testCallingThreshold[4](115, 10, 210, 0.1, 6.2, false) | 0s | passed |
| testCallingThreshold[5](114, 10, 210, 0.1, 6.2, true) | 0s | passed |
| testCentralLimitTheorem | 0.010s | passed |
| testDeterministicQualityAndDepth | 0.001s | passed |
| testDrawSumOfQScores[0](testdata/picard/analysis/TheoreticalSensitivity/test_Solexa-332667.wgs_metrics, 500, 0.03) | 0.005s | passed |
| testDrawSumOfQScores[1](testdata/picard/analysis/TheoreticalSensitivity/test_Solexa-332667.wgs_metrics, 20, 0.05) | 0.001s | passed |
| testDrawSumOfQScores[2](testdata/picard/analysis/TheoreticalSensitivity/test_Solexa-332667.wgs_metrics, 10, 0.1) | 0.002s | passed |
| testDrawSumOfQScores[3](testdata/picard/analysis/TheoreticalSensitivity/test_25103070136.targeted_pcr_metrics, 500, 0.03) | 0.002s | passed |
| testDrawSumOfQScores[4](testdata/picard/analysis/TheoreticalSensitivity/test_25103070136.targeted_pcr_metrics, 20, 0.05) | 0.001s | passed |
| testDrawSumOfQScores[5](testdata/picard/analysis/TheoreticalSensitivity/test_25103070136.targeted_pcr_metrics, 10, 0.1) | 0.001s | passed |
| testHetAltDepthDistribution | 0.004s | passed |
| testHetSensDistributions | 0.295s | passed |
| testHetSensTargeted[0](0.89734254, testdata/picard/analysis/TheoreticalSensitivity/test_Solexa-332667.wgs_metrics) | 0.556s | passed |
| testHetSensTargeted[1](0.95618666, testdata/picard/analysis/TheoreticalSensitivity/test_25103070136.targeted_pcr_metrics) | 4.641s | passed |
| testHetVsArbitrary[0](testdata/picard/analysis/TheoreticalSensitivity/test_Solexa-332667.wgs_metrics, 0.02, 500) | 0.430s | passed |
| testHetVsArbitrary[1](testdata/picard/analysis/TheoreticalSensitivity/test_25103070136.targeted_pcr_metrics, 0.01, 500) | 2.376s | passed |
| testProportionsAboveThresholds | 0s | passed |
| testRouletteWheel | 0s | passed |
| testSensitivityAtConstantDepth[0](1.0, testdata/picard/analysis/TheoreticalSensitivity/test_Solexa-332667.wgs_metrics, 0.5, 30, 10000, 0.01) | 0.079s | passed |
| testSensitivityAtConstantDepth[1](0.78, testdata/picard/analysis/TheoreticalSensitivity/test_25103070136.targeted_pcr_metrics, 0.1, 30, 10000, 0.02) | 0.073s | passed |
| testSensitivityAtConstantDepth[2](0.26, testdata/picard/analysis/TheoreticalSensitivity/test_25103070136.targeted_pcr_metrics, 0.1, 10, 10000, 0.01) | 0.038s | passed |
| testSensitivity[0](0.9, testdata/picard/analysis/TheoreticalSensitivity/test_Solexa-332667.wgs_metrics, 0.5, 400) | 0.073s | passed |
| testSensitivity[1](0.78, testdata/picard/analysis/TheoreticalSensitivity/test_Solexa-332667.wgs_metrics, 0.3, 400) | 0.077s | passed |
| testSensitivity[2](0.29, testdata/picard/analysis/TheoreticalSensitivity/test_Solexa-332667.wgs_metrics, 0.1, 500) | 0.074s | passed |
| testSensitivity[3](0.08, testdata/picard/analysis/TheoreticalSensitivity/test_Solexa-332667.wgs_metrics, 0.05, 500) | 0.056s | passed |
| testTrimDistributions[0]([D@70143ee4, [D@74f1c9b9) | 0s | passed |
| testTrimDistributions[1]([D@17b1f9a7, [D@460306ab) | 0s | passed |
| testTrimDistributions[2]([D@7ee0af8c, [D@66041d36) | 0s | passed |
| testTrimDistributions[3]([D@29260ef6, [D@52c14891) | 0s | passed |
| testTrimDistributions[4]([D@4f1545bd, [D@56ddb317) | 0s | passed |
| testTrimDistributions[5]([D@4abc179d, [D@2fe19bda) | 0s | passed |
| testTrimDistributions[6]([D@1df2b230, [D@37d85eec) | 0s | passed |
Standard error
INFO 2025-04-24 12:59:44 TheoreticalSensitivity Creating Roulette Wheel INFO 2025-04-24 12:59:44 TheoreticalSensitivity Calculating quality sums from quality sampler INFO 2025-04-24 12:59:44 TheoreticalSensitivity 0 sampling iterations completed INFO 2025-04-24 12:59:44 TheoreticalSensitivity Calculating theoretical het sensitivity INFO 2025-04-24 12:59:44 TheoreticalSensitivity Creating Roulette Wheel INFO 2025-04-24 12:59:44 TheoreticalSensitivity Calculating quality sums from quality sampler INFO 2025-04-24 12:59:44 TheoreticalSensitivity 0 sampling iterations completed INFO 2025-04-24 12:59:44 TheoreticalSensitivity Calculating theoretical het sensitivity INFO 2025-04-24 12:59:44 TheoreticalSensitivity Creating Roulette Wheel INFO 2025-04-24 12:59:44 TheoreticalSensitivity Calculating quality sums from quality sampler INFO 2025-04-24 12:59:44 TheoreticalSensitivity 0 sampling iterations completed INFO 2025-04-24 12:59:44 TheoreticalSensitivity Calculating theoretical het sensitivity INFO 2025-04-24 12:59:44 TheoreticalSensitivity Creating Roulette Wheel INFO 2025-04-24 12:59:44 TheoreticalSensitivity Calculating quality sums from quality sampler INFO 2025-04-24 12:59:44 TheoreticalSensitivity 0 sampling iterations completed INFO 2025-04-24 12:59:44 TheoreticalSensitivity Calculating theoretical het sensitivity INFO 2025-04-24 12:59:44 TheoreticalSensitivity Creating Roulette Wheel INFO 2025-04-24 12:59:44 TheoreticalSensitivity Calculating quality sums from quality sampler INFO 2025-04-24 12:59:44 TheoreticalSensitivity 0 sampling iterations completed INFO 2025-04-24 12:59:44 TheoreticalSensitivity Calculating theoretical het sensitivity INFO 2025-04-24 12:59:44 TheoreticalSensitivity Creating Roulette Wheel INFO 2025-04-24 12:59:44 TheoreticalSensitivity Calculating quality sums from quality sampler INFO 2025-04-24 12:59:44 TheoreticalSensitivity 0 sampling iterations completed INFO 2025-04-24 12:59:44 TheoreticalSensitivity Calculating theoretical het sensitivity INFO 2025-04-24 12:59:44 TheoreticalSensitivity Creating Roulette Wheel INFO 2025-04-24 12:59:44 TheoreticalSensitivity Calculating quality sums from quality sampler INFO 2025-04-24 12:59:44 TheoreticalSensitivity 0 sampling iterations completed INFO 2025-04-24 12:59:44 TheoreticalSensitivity Calculating theoretical het sensitivity INFO 2025-04-24 12:59:44 TheoreticalSensitivity Creating Roulette Wheel INFO 2025-04-24 12:59:44 TheoreticalSensitivity Calculating quality sums from quality sampler INFO 2025-04-24 12:59:44 TheoreticalSensitivity 0 sampling iterations completed INFO 2025-04-24 12:59:44 TheoreticalSensitivity Calculating theoretical het sensitivity INFO 2025-04-24 12:59:44 TheoreticalSensitivity Creating Roulette Wheel INFO 2025-04-24 12:59:44 TheoreticalSensitivity Calculating quality sums from quality sampler INFO 2025-04-24 12:59:44 TheoreticalSensitivity 0 sampling iterations completed INFO 2025-04-24 12:59:44 TheoreticalSensitivity Calculating theoretical het sensitivity INFO 2025-04-24 12:59:44 TheoreticalSensitivity Creating Roulette Wheel INFO 2025-04-24 12:59:44 TheoreticalSensitivity Calculating quality sums from quality sampler INFO 2025-04-24 12:59:44 TheoreticalSensitivity 0 sampling iterations completed INFO 2025-04-24 12:59:44 TheoreticalSensitivity Calculating theoretical het sensitivity INFO 2025-04-24 12:59:44 TheoreticalSensitivity Creating Roulette Wheel INFO 2025-04-24 12:59:44 TheoreticalSensitivity Calculating quality sums from quality sampler INFO 2025-04-24 12:59:44 TheoreticalSensitivity 0 sampling iterations completed INFO 2025-04-24 12:59:44 TheoreticalSensitivity Calculating theoretical het sensitivity INFO 2025-04-24 12:59:44 TheoreticalSensitivity Creating Roulette Wheel INFO 2025-04-24 12:59:44 TheoreticalSensitivity Calculating quality sums from quality sampler INFO 2025-04-24 12:59:44 TheoreticalSensitivity 0 sampling iterations completed INFO 2025-04-24 12:59:44 TheoreticalSensitivity Calculating theoretical het sensitivity INFO 2025-04-24 12:59:44 TheoreticalSensitivity Creating Roulette Wheel INFO 2025-04-24 12:59:44 TheoreticalSensitivity Calculating quality sums from quality sampler INFO 2025-04-24 12:59:44 TheoreticalSensitivity 0 sampling iterations completed INFO 2025-04-24 12:59:44 TheoreticalSensitivity Calculating theoretical het sensitivity INFO 2025-04-24 12:59:44 TheoreticalSensitivity Creating Roulette Wheel INFO 2025-04-24 12:59:44 TheoreticalSensitivity Calculating quality sums from quality sampler INFO 2025-04-24 12:59:44 TheoreticalSensitivity 0 sampling iterations completed INFO 2025-04-24 12:59:44 TheoreticalSensitivity Calculating theoretical het sensitivity INFO 2025-04-24 12:59:44 TheoreticalSensitivity Creating Roulette Wheel INFO 2025-04-24 12:59:44 TheoreticalSensitivity Calculating quality sums from quality sampler INFO 2025-04-24 12:59:44 TheoreticalSensitivity 0 sampling iterations completed INFO 2025-04-24 12:59:44 TheoreticalSensitivity Calculating theoretical het sensitivity INFO 2025-04-24 12:59:44 TheoreticalSensitivity Creating Roulette Wheel INFO 2025-04-24 12:59:44 TheoreticalSensitivity Calculating quality sums from quality sampler INFO 2025-04-24 12:59:44 TheoreticalSensitivity 0 sampling iterations completed INFO 2025-04-24 12:59:44 TheoreticalSensitivity Calculating theoretical het sensitivity INFO 2025-04-24 12:59:44 TheoreticalSensitivity Creating Roulette Wheel INFO 2025-04-24 12:59:44 TheoreticalSensitivity Calculating quality sums from quality sampler INFO 2025-04-24 12:59:44 TheoreticalSensitivity 0 sampling iterations completed INFO 2025-04-24 12:59:44 TheoreticalSensitivity Calculating theoretical het sensitivity INFO 2025-04-24 12:59:44 TheoreticalSensitivity Creating Roulette Wheel INFO 2025-04-24 12:59:44 TheoreticalSensitivity Calculating quality sums from quality sampler INFO 2025-04-24 12:59:44 TheoreticalSensitivity 0 sampling iterations completed INFO 2025-04-24 12:59:44 TheoreticalSensitivity Calculating theoretical het sensitivity INFO 2025-04-24 12:59:44 TheoreticalSensitivity Creating Roulette Wheel INFO 2025-04-24 12:59:44 TheoreticalSensitivity Calculating quality sums from quality sampler INFO 2025-04-24 12:59:44 TheoreticalSensitivity 0 sampling iterations completed INFO 2025-04-24 12:59:44 TheoreticalSensitivity Calculating theoretical het sensitivity INFO 2025-04-24 12:59:44 TheoreticalSensitivity Creating Roulette Wheel INFO 2025-04-24 12:59:44 TheoreticalSensitivity Calculating quality sums from quality sampler INFO 2025-04-24 12:59:44 TheoreticalSensitivity 0 sampling iterations completed INFO 2025-04-24 12:59:44 TheoreticalSensitivity Calculating theoretical het sensitivity INFO 2025-04-24 12:59:44 TheoreticalSensitivity Creating Roulette Wheel INFO 2025-04-24 12:59:44 TheoreticalSensitivity Calculating quality sums from quality sampler INFO 2025-04-24 12:59:44 TheoreticalSensitivity 0 sampling iterations completed INFO 2025-04-24 12:59:44 TheoreticalSensitivity Calculating theoretical het sensitivity INFO 2025-04-24 12:59:44 TheoreticalSensitivity Creating Roulette Wheel INFO 2025-04-24 12:59:44 TheoreticalSensitivity Calculating quality sums from quality sampler INFO 2025-04-24 12:59:44 TheoreticalSensitivity 0 sampling iterations completed INFO 2025-04-24 12:59:44 TheoreticalSensitivity Calculating theoretical het sensitivity INFO 2025-04-24 12:59:44 TheoreticalSensitivity Creating Roulette Wheel INFO 2025-04-24 12:59:44 TheoreticalSensitivity Calculating quality sums from quality sampler INFO 2025-04-24 12:59:44 TheoreticalSensitivity 0 sampling iterations completed INFO 2025-04-24 12:59:44 TheoreticalSensitivity Calculating theoretical het sensitivity INFO 2025-04-24 12:59:44 TheoreticalSensitivity Creating Roulette Wheel INFO 2025-04-24 12:59:44 TheoreticalSensitivity Calculating quality sums from quality sampler INFO 2025-04-24 12:59:44 TheoreticalSensitivity 0 sampling iterations completed INFO 2025-04-24 12:59:44 TheoreticalSensitivity Calculating theoretical het sensitivity INFO 2025-04-24 12:59:44 TheoreticalSensitivity Creating Roulette Wheel INFO 2025-04-24 12:59:44 TheoreticalSensitivity Calculating quality sums from quality sampler INFO 2025-04-24 12:59:44 TheoreticalSensitivity 0 sampling iterations completed INFO 2025-04-24 12:59:44 TheoreticalSensitivity Calculating theoretical het sensitivity INFO 2025-04-24 12:59:44 TheoreticalSensitivity Creating Roulette Wheel INFO 2025-04-24 12:59:44 TheoreticalSensitivity Calculating quality sums from quality sampler INFO 2025-04-24 12:59:44 TheoreticalSensitivity 0 sampling iterations completed INFO 2025-04-24 12:59:44 TheoreticalSensitivity Calculating theoretical het sensitivity INFO 2025-04-24 12:59:44 TheoreticalSensitivity Creating Roulette Wheel INFO 2025-04-24 12:59:44 TheoreticalSensitivity Calculating quality sums from quality sampler INFO 2025-04-24 12:59:44 TheoreticalSensitivity 0 sampling iterations completed INFO 2025-04-24 12:59:45 TheoreticalSensitivity Calculating theoretical het sensitivity INFO 2025-04-24 12:59:45 TheoreticalSensitivity Creating Roulette Wheel INFO 2025-04-24 12:59:45 TheoreticalSensitivity Calculating quality sums from quality sampler INFO 2025-04-24 12:59:45 TheoreticalSensitivity 0 sampling iterations completed INFO 2025-04-24 12:59:49 TheoreticalSensitivity Calculating theoretical het sensitivity INFO 2025-04-24 12:59:49 TheoreticalSensitivity Creating Roulette Wheel INFO 2025-04-24 12:59:49 TheoreticalSensitivity Calculating quality sums from quality sampler INFO 2025-04-24 12:59:49 TheoreticalSensitivity 0 sampling iterations completed INFO 2025-04-24 12:59:50 TheoreticalSensitivity Calculating theoretical het sensitivity INFO 2025-04-24 12:59:50 TheoreticalSensitivity Creating Roulette Wheel INFO 2025-04-24 12:59:50 TheoreticalSensitivity Calculating quality sums from quality sampler INFO 2025-04-24 12:59:50 TheoreticalSensitivity 0 sampling iterations completed INFO 2025-04-24 12:59:52 TheoreticalSensitivity Calculating theoretical het sensitivity