Class picard.analysis.CompareMetricsTest

all > picard.analysis > CompareMetricsTest
41

tests
0

failures
0

ignored
1.213s

duration
100%

successful

Tests

Test Duration Result
testCompareMetrics[0](1.0, 1.0, true, , null) 0.001s passed
testCompareMetrics[0](wgs_test1.wgs_metrics, wgs_test2.wgs_metrics, null, null, null, null, null, 1) 0.005s passed
testCompareMetrics[10](1, 1, true, , null) 0.001s passed
testCompareMetrics[10](wgs_test1.raw_wgs_metrics, wgs_test2.raw_wgs_metrics, null, null, null, null, null, 1) 0.249s passed
testCompareMetrics[11](1, 2, false, Changed by 1.0 (relative change of 1.0), null) 0s passed
testCompareMetrics[11](wgs_test1.2rows.raw_wgs_metrics, wgs_test1.2rows.raw_wgs_metrics, null, null, null, null, null, 0) 0.306s passed
testCompareMetrics[12](1, 0, false, Changed by -1.0 (relative change of -1.0), null) 0.001s passed
testCompareMetrics[12](wgs_test1.2rows.raw_wgs_metrics, wgs_test2.2rows.raw_wgs_metrics, null, null, null, null, null, 1) 0.249s passed
testCompareMetrics[13](1.0, 1.0, true, , null) 0s passed
testCompareMetrics[13](wgs_test1.raw_wgs_metrics, wgs_test2.2rows.raw_wgs_metrics, null, null, null, null, null, 1) 0.239s passed
testCompareMetrics[14](NaN, NaN, true, , null) 0s passed
testCompareMetrics[14](wgs_test1.fingerprinting_summary_metrics, wgs_test2.fingerprinting_summary_metrics, null, null, null, null, null, 1) 0.002s passed
testCompareMetrics[15](NaN, NaN, true, , null) 0s passed
testCompareMetrics[15](test1.arrays_variant_calling_detail_metrics, test2.arrays_variant_calling_detail_metrics, null, null, null, null, null, 1) 0.002s passed
testCompareMetrics[16](test1.arrays_variant_calling_detail_metrics, test2.arrays_variant_calling_detail_metrics, AUTOCALL_DATE, null, null, null, null, 0) 0.001s passed
testCompareMetrics[17](test1.arrays_variant_calling_summary_metrics, test2.arrays_variant_calling_summary_metrics, null, null, null, null, null, 0) 0.001s passed
testCompareMetrics[18](wgs_test1.2rows.fingerprinting_summary_metrics, wgs_test2.2rows.fingerprinting_summary_metrics, null, null, false, null, null, 1) 0.001s passed
testCompareMetrics[19](wgs_test1.2rows.fingerprinting_summary_metrics, wgs_test2.2rows.fingerprinting_summary_metrics, null, null, false, [SAMPLE], null, 0) 0.001s passed
testCompareMetrics[1](1.0, 1.1, false, Changed by 0.10000000000000009 (relative change of 0.10000000000000009) which is outside of the allowable relative change tolerance of 0.05, 0.05) 0.002s passed
testCompareMetrics[1](wgs_test1.wgs_metrics, wgs_test2.wgs_metrics, GENOME_TERRITORY, [SD_COVERAGE:0.00002], true, null, null, 0) 0.002s passed
testCompareMetrics[20](wgs_test1.missing_metric.wgs_metrics, wgs_test1.wgs_metrics, null, null, false, null, null, 1) 0.003s passed
testCompareMetrics[21](wgs_test1.missing_metric.wgs_metrics, wgs_test1.wgs_metrics, null, null, false, null, [HET_SNP_SENSITIVITY], 0) 0.002s passed
testCompareMetrics[2](1.0, 1.1, false, Changed by 0.10000000000000009 (relative change of 0.10000000000000009) which is outside of the allowable relative change tolerance of 0.1, 0.1) 0s passed
testCompareMetrics[2](wgs_test1.wgs_metrics, wgs_test2.wgs_metrics, GENOME_TERRITORY, [SD_COVERAGE:0.00002], false, null, null, 1) 0.002s passed
testCompareMetrics[3](1.0, 1.1, true, Changed by 0.10000000000000009 (relative change of 0.10000000000000009) which is within the allowable relative change tolerance of 0.1001, 0.1001) 0s passed
testCompareMetrics[3](wgs_test1.wgs_metrics, wgs_test2.wgs_metrics, GENOME_TERRITORY, [SD_COVERAGE:0.00002], null, null, null, 1) 0.002s passed
testCompareMetrics[4](1.0, 1.1, true, Changed by 0.10000000000000009 (relative change of 0.10000000000000009) which is within the allowable relative change tolerance of 0.2, 0.2) 0s passed
testCompareMetrics[4](wgs_test1.wgs_metrics, wgs_test2.wgs_metrics, GENOME_TERRITORY, [SD_COVERAGE:0.00001], null, null, null, 1) 0.002s passed
testCompareMetrics[5](1.0, 1.0, true, , null) 0s passed
testCompareMetrics[5](wgs_test1.wgs_metrics, wgs_test2.wgs_metrics, null, [GENOME_TERRITORY:0.0001, SD_COVERAGE:0.00002], true, null, null, 0) 0.002s passed
testCompareMetrics[6](1.0, 1.1, false, Changed by 0.10000002384185791 (relative change of 0.10000002384185791) which is outside of the allowable relative change tolerance of 0.05, 0.05) 0s passed
testCompareMetrics[6](wgs_test1.wgs_metrics, wgs_test2.wgs_metrics, null, [GENOME_TERRITORY:0.0001, SD_COVERAGE:0.00002], false, null, null, 1) 0.002s passed
testCompareMetrics[7](1.0, 1.1, false, Changed by 0.10000002384185791 (relative change of 0.10000002384185791) which is outside of the allowable relative change tolerance of 0.1, 0.1) 0s passed
testCompareMetrics[7](wgs_test1.wgs_metrics, wgs_test2.wgs_metrics, null, [GENOME_TERRITORY:0.0001, SD_COVERAGE:0.00002], null, null, null, 1) 0.001s passed
testCompareMetrics[8](1.0, 1.1, true, Changed by 0.10000002384185791 (relative change of 0.10000002384185791) which is within the allowable relative change tolerance of 0.1001, 0.1001) 0s passed
testCompareMetrics[8](wgs_test1.wgs_metrics, wgs_test2.wgs_metrics, null, [GENOME_TERRITORY:0.0001, SD_COVERAGE:0.00001], null, null, null, 1) 0.001s passed
testCompareMetrics[9](1.0, 1.1, true, Changed by 0.10000002384185791 (relative change of 0.10000002384185791) which is within the allowable relative change tolerance of 0.2, 0.2) 0s passed
testCompareMetrics[9](wgs_test1.wgs_metrics, wgs_test1.wgs_metrics, null, null, null, null, null, 0) 0.002s passed
testFailCompareMetricsInvalidMetricToAllowableRelativeChange 0.001s passed
testFailCompareMetricsInvalidMetricToIgnore 0.001s passed
testFailCompareMetricsOnDifferentClasses 0.129s passed

Standard error

[Thu Apr 24 12:59:43 EDT 2025] CompareMetrics --INPUT testdata/picard/analysis/metrics/wgs_test1.wgs_metrics --INPUT testdata/picard/analysis/metrics/wgs_test2.wgs_metrics --IGNORE_HISTOGRAM_DIFFERENCES false --VERBOSITY INFO --QUIET false --VALIDATION_STRINGENCY STRICT --COMPRESSION_LEVEL 5 --MAX_RECORDS_IN_RAM 500000 --CREATE_INDEX false --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Thu Apr 24 12:59:43 EDT 2025] Executing as root@lovelace on Linux 6.1.0-28-amd64 amd64; OpenJDK 64-Bit Server VM 17.0.13+11-Debian-2deb12u1; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:null
INFO	2025-04-24 12:59:43	CompareMetrics	picard.analysis.WgsMetrics Metric files testdata/picard/analysis/metrics/wgs_test1.wgs_metrics and testdata/picard/analysis/metrics/wgs_test2.wgs_metrics are NOT equal
ERROR	2025-04-24 12:59:43	CompareMetrics	Key: 0 Metric: GENOME_TERRITORY values differ. Value1: 2745186692 Value2: 2745186691 Changed by -1.0 (relative change of -3.6427395007931214E-10)
ERROR	2025-04-24 12:59:43	CompareMetrics	Key: 0 Metric: SD_COVERAGE values differ. Value1: 0.059988 Value2: 0.059989 Changed by 1.000000000001E-6 (relative change of 1.6670000666816697E-5)
ERROR	2025-04-24 12:59:43	CompareMetrics	Metric Histograms differ
[Thu Apr 24 12:59:43 EDT 2025] picard.analysis.CompareMetrics done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1073741824
To get help, see http://broadinstitute.github.io/picard/index.html#GettingHelp
[Thu Apr 24 12:59:43 EDT 2025] CompareMetrics --INPUT testdata/picard/analysis/metrics/wgs_test1.wgs_metrics --INPUT testdata/picard/analysis/metrics/wgs_test2.wgs_metrics --METRICS_TO_IGNORE GENOME_TERRITORY --METRIC_ALLOWABLE_RELATIVE_CHANGE SD_COVERAGE:0.00002 --IGNORE_HISTOGRAM_DIFFERENCES true --VERBOSITY INFO --QUIET false --VALIDATION_STRINGENCY STRICT --COMPRESSION_LEVEL 5 --MAX_RECORDS_IN_RAM 500000 --CREATE_INDEX false --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Thu Apr 24 12:59:43 EDT 2025] Executing as root@lovelace on Linux 6.1.0-28-amd64 amd64; OpenJDK 64-Bit Server VM 17.0.13+11-Debian-2deb12u1; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:null
INFO	2025-04-24 12:59:43	CompareMetrics	picard.analysis.WgsMetrics Metric files testdata/picard/analysis/metrics/wgs_test1.wgs_metrics and testdata/picard/analysis/metrics/wgs_test2.wgs_metrics are equal
[Thu Apr 24 12:59:43 EDT 2025] picard.analysis.CompareMetrics done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1073741824
[Thu Apr 24 12:59:43 EDT 2025] CompareMetrics --INPUT testdata/picard/analysis/metrics/wgs_test1.wgs_metrics --INPUT testdata/picard/analysis/metrics/wgs_test2.wgs_metrics --METRICS_TO_IGNORE GENOME_TERRITORY --METRIC_ALLOWABLE_RELATIVE_CHANGE SD_COVERAGE:0.00002 --IGNORE_HISTOGRAM_DIFFERENCES false --VERBOSITY INFO --QUIET false --VALIDATION_STRINGENCY STRICT --COMPRESSION_LEVEL 5 --MAX_RECORDS_IN_RAM 500000 --CREATE_INDEX false --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Thu Apr 24 12:59:43 EDT 2025] Executing as root@lovelace on Linux 6.1.0-28-amd64 amd64; OpenJDK 64-Bit Server VM 17.0.13+11-Debian-2deb12u1; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:null
INFO	2025-04-24 12:59:43	CompareMetrics	picard.analysis.WgsMetrics Metric files testdata/picard/analysis/metrics/wgs_test1.wgs_metrics and testdata/picard/analysis/metrics/wgs_test2.wgs_metrics are NOT equal
ERROR	2025-04-24 12:59:43	CompareMetrics	Metric Histograms differ
[Thu Apr 24 12:59:43 EDT 2025] picard.analysis.CompareMetrics done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1073741824
To get help, see http://broadinstitute.github.io/picard/index.html#GettingHelp
[Thu Apr 24 12:59:43 EDT 2025] CompareMetrics --INPUT testdata/picard/analysis/metrics/wgs_test1.wgs_metrics --INPUT testdata/picard/analysis/metrics/wgs_test2.wgs_metrics --METRICS_TO_IGNORE GENOME_TERRITORY --METRIC_ALLOWABLE_RELATIVE_CHANGE SD_COVERAGE:0.00002 --IGNORE_HISTOGRAM_DIFFERENCES false --VERBOSITY INFO --QUIET false --VALIDATION_STRINGENCY STRICT --COMPRESSION_LEVEL 5 --MAX_RECORDS_IN_RAM 500000 --CREATE_INDEX false --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Thu Apr 24 12:59:43 EDT 2025] Executing as root@lovelace on Linux 6.1.0-28-amd64 amd64; OpenJDK 64-Bit Server VM 17.0.13+11-Debian-2deb12u1; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:null
INFO	2025-04-24 12:59:43	CompareMetrics	picard.analysis.WgsMetrics Metric files testdata/picard/analysis/metrics/wgs_test1.wgs_metrics and testdata/picard/analysis/metrics/wgs_test2.wgs_metrics are NOT equal
ERROR	2025-04-24 12:59:43	CompareMetrics	Metric Histograms differ
[Thu Apr 24 12:59:43 EDT 2025] picard.analysis.CompareMetrics done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1073741824
To get help, see http://broadinstitute.github.io/picard/index.html#GettingHelp
[Thu Apr 24 12:59:43 EDT 2025] CompareMetrics --INPUT testdata/picard/analysis/metrics/wgs_test1.wgs_metrics --INPUT testdata/picard/analysis/metrics/wgs_test2.wgs_metrics --METRICS_TO_IGNORE GENOME_TERRITORY --METRIC_ALLOWABLE_RELATIVE_CHANGE SD_COVERAGE:0.00001 --IGNORE_HISTOGRAM_DIFFERENCES false --VERBOSITY INFO --QUIET false --VALIDATION_STRINGENCY STRICT --COMPRESSION_LEVEL 5 --MAX_RECORDS_IN_RAM 500000 --CREATE_INDEX false --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Thu Apr 24 12:59:43 EDT 2025] Executing as root@lovelace on Linux 6.1.0-28-amd64 amd64; OpenJDK 64-Bit Server VM 17.0.13+11-Debian-2deb12u1; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:null
INFO	2025-04-24 12:59:43	CompareMetrics	picard.analysis.WgsMetrics Metric files testdata/picard/analysis/metrics/wgs_test1.wgs_metrics and testdata/picard/analysis/metrics/wgs_test2.wgs_metrics are NOT equal
ERROR	2025-04-24 12:59:43	CompareMetrics	Key: 0 Metric: SD_COVERAGE values differ. Value1: 0.059988 Value2: 0.059989 Changed by 1.000000000001E-6 (relative change of 1.6670000666816697E-5) which is outside of the allowable relative change tolerance of 1.0E-5
ERROR	2025-04-24 12:59:43	CompareMetrics	Metric Histograms differ
[Thu Apr 24 12:59:43 EDT 2025] picard.analysis.CompareMetrics done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1073741824
To get help, see http://broadinstitute.github.io/picard/index.html#GettingHelp
[Thu Apr 24 12:59:43 EDT 2025] CompareMetrics --INPUT testdata/picard/analysis/metrics/wgs_test1.wgs_metrics --INPUT testdata/picard/analysis/metrics/wgs_test2.wgs_metrics --METRIC_ALLOWABLE_RELATIVE_CHANGE GENOME_TERRITORY:0.0001 --METRIC_ALLOWABLE_RELATIVE_CHANGE SD_COVERAGE:0.00002 --IGNORE_HISTOGRAM_DIFFERENCES true --VERBOSITY INFO --QUIET false --VALIDATION_STRINGENCY STRICT --COMPRESSION_LEVEL 5 --MAX_RECORDS_IN_RAM 500000 --CREATE_INDEX false --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Thu Apr 24 12:59:43 EDT 2025] Executing as root@lovelace on Linux 6.1.0-28-amd64 amd64; OpenJDK 64-Bit Server VM 17.0.13+11-Debian-2deb12u1; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:null
INFO	2025-04-24 12:59:43	CompareMetrics	picard.analysis.WgsMetrics Metric files testdata/picard/analysis/metrics/wgs_test1.wgs_metrics and testdata/picard/analysis/metrics/wgs_test2.wgs_metrics are equal
[Thu Apr 24 12:59:43 EDT 2025] picard.analysis.CompareMetrics done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1073741824
[Thu Apr 24 12:59:43 EDT 2025] CompareMetrics --INPUT testdata/picard/analysis/metrics/wgs_test1.wgs_metrics --INPUT testdata/picard/analysis/metrics/wgs_test2.wgs_metrics --METRIC_ALLOWABLE_RELATIVE_CHANGE GENOME_TERRITORY:0.0001 --METRIC_ALLOWABLE_RELATIVE_CHANGE SD_COVERAGE:0.00002 --IGNORE_HISTOGRAM_DIFFERENCES false --VERBOSITY INFO --QUIET false --VALIDATION_STRINGENCY STRICT --COMPRESSION_LEVEL 5 --MAX_RECORDS_IN_RAM 500000 --CREATE_INDEX false --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Thu Apr 24 12:59:43 EDT 2025] Executing as root@lovelace on Linux 6.1.0-28-amd64 amd64; OpenJDK 64-Bit Server VM 17.0.13+11-Debian-2deb12u1; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:null
INFO	2025-04-24 12:59:43	CompareMetrics	picard.analysis.WgsMetrics Metric files testdata/picard/analysis/metrics/wgs_test1.wgs_metrics and testdata/picard/analysis/metrics/wgs_test2.wgs_metrics are NOT equal
ERROR	2025-04-24 12:59:43	CompareMetrics	Metric Histograms differ
[Thu Apr 24 12:59:43 EDT 2025] picard.analysis.CompareMetrics done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1073741824
To get help, see http://broadinstitute.github.io/picard/index.html#GettingHelp
[Thu Apr 24 12:59:43 EDT 2025] CompareMetrics --INPUT testdata/picard/analysis/metrics/wgs_test1.wgs_metrics --INPUT testdata/picard/analysis/metrics/wgs_test2.wgs_metrics --METRIC_ALLOWABLE_RELATIVE_CHANGE GENOME_TERRITORY:0.0001 --METRIC_ALLOWABLE_RELATIVE_CHANGE SD_COVERAGE:0.00002 --IGNORE_HISTOGRAM_DIFFERENCES false --VERBOSITY INFO --QUIET false --VALIDATION_STRINGENCY STRICT --COMPRESSION_LEVEL 5 --MAX_RECORDS_IN_RAM 500000 --CREATE_INDEX false --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Thu Apr 24 12:59:43 EDT 2025] Executing as root@lovelace on Linux 6.1.0-28-amd64 amd64; OpenJDK 64-Bit Server VM 17.0.13+11-Debian-2deb12u1; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:null
INFO	2025-04-24 12:59:43	CompareMetrics	picard.analysis.WgsMetrics Metric files testdata/picard/analysis/metrics/wgs_test1.wgs_metrics and testdata/picard/analysis/metrics/wgs_test2.wgs_metrics are NOT equal
ERROR	2025-04-24 12:59:43	CompareMetrics	Metric Histograms differ
[Thu Apr 24 12:59:43 EDT 2025] picard.analysis.CompareMetrics done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1073741824
To get help, see http://broadinstitute.github.io/picard/index.html#GettingHelp
[Thu Apr 24 12:59:43 EDT 2025] CompareMetrics --INPUT testdata/picard/analysis/metrics/wgs_test1.wgs_metrics --INPUT testdata/picard/analysis/metrics/wgs_test2.wgs_metrics --METRIC_ALLOWABLE_RELATIVE_CHANGE GENOME_TERRITORY:0.0001 --METRIC_ALLOWABLE_RELATIVE_CHANGE SD_COVERAGE:0.00001 --IGNORE_HISTOGRAM_DIFFERENCES false --VERBOSITY INFO --QUIET false --VALIDATION_STRINGENCY STRICT --COMPRESSION_LEVEL 5 --MAX_RECORDS_IN_RAM 500000 --CREATE_INDEX false --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Thu Apr 24 12:59:43 EDT 2025] Executing as root@lovelace on Linux 6.1.0-28-amd64 amd64; OpenJDK 64-Bit Server VM 17.0.13+11-Debian-2deb12u1; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:null
INFO	2025-04-24 12:59:43	CompareMetrics	picard.analysis.WgsMetrics Metric files testdata/picard/analysis/metrics/wgs_test1.wgs_metrics and testdata/picard/analysis/metrics/wgs_test2.wgs_metrics are NOT equal
ERROR	2025-04-24 12:59:43	CompareMetrics	Key: 0 Metric: SD_COVERAGE values differ. Value1: 0.059988 Value2: 0.059989 Changed by 1.000000000001E-6 (relative change of 1.6670000666816697E-5) which is outside of the allowable relative change tolerance of 1.0E-5
ERROR	2025-04-24 12:59:43	CompareMetrics	Metric Histograms differ
[Thu Apr 24 12:59:43 EDT 2025] picard.analysis.CompareMetrics done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1073741824
To get help, see http://broadinstitute.github.io/picard/index.html#GettingHelp
[Thu Apr 24 12:59:43 EDT 2025] CompareMetrics --INPUT testdata/picard/analysis/metrics/wgs_test1.wgs_metrics --INPUT testdata/picard/analysis/metrics/wgs_test1.wgs_metrics --IGNORE_HISTOGRAM_DIFFERENCES false --VERBOSITY INFO --QUIET false --VALIDATION_STRINGENCY STRICT --COMPRESSION_LEVEL 5 --MAX_RECORDS_IN_RAM 500000 --CREATE_INDEX false --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Thu Apr 24 12:59:43 EDT 2025] Executing as root@lovelace on Linux 6.1.0-28-amd64 amd64; OpenJDK 64-Bit Server VM 17.0.13+11-Debian-2deb12u1; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:null
INFO	2025-04-24 12:59:43	CompareMetrics	picard.analysis.WgsMetrics Metric files testdata/picard/analysis/metrics/wgs_test1.wgs_metrics and testdata/picard/analysis/metrics/wgs_test1.wgs_metrics are equal
[Thu Apr 24 12:59:43 EDT 2025] picard.analysis.CompareMetrics done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1073741824
[Thu Apr 24 12:59:43 EDT 2025] CompareMetrics --INPUT testdata/picard/analysis/metrics/wgs_test1.raw_wgs_metrics --INPUT testdata/picard/analysis/metrics/wgs_test2.raw_wgs_metrics --IGNORE_HISTOGRAM_DIFFERENCES false --VERBOSITY INFO --QUIET false --VALIDATION_STRINGENCY STRICT --COMPRESSION_LEVEL 5 --MAX_RECORDS_IN_RAM 500000 --CREATE_INDEX false --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Thu Apr 24 12:59:43 EDT 2025] Executing as root@lovelace on Linux 6.1.0-28-amd64 amd64; OpenJDK 64-Bit Server VM 17.0.13+11-Debian-2deb12u1; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:null
INFO	2025-04-24 12:59:43	CompareMetrics	picard.analysis.CollectRawWgsMetrics$RawWgsMetrics Metric files testdata/picard/analysis/metrics/wgs_test1.raw_wgs_metrics and testdata/picard/analysis/metrics/wgs_test2.raw_wgs_metrics are NOT equal
ERROR	2025-04-24 12:59:43	CompareMetrics	Key: 0 Metric: GENOME_TERRITORY values differ. Value1: 2745186694 Value2: 2745186691 Changed by -3.0 (relative change of -1.0928218494417632E-9)
ERROR	2025-04-24 12:59:43	CompareMetrics	Key: 0 Metric: PCT_EXC_BASEQ values differ. Value1: 0.122134 Value2: 0.122133 Changed by -1.000000000001E-6 (relative change of -8.187728232932681E-6)
ERROR	2025-04-24 12:59:43	CompareMetrics	Metric Histograms differ
[Thu Apr 24 12:59:43 EDT 2025] picard.analysis.CompareMetrics done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1073741824
To get help, see http://broadinstitute.github.io/picard/index.html#GettingHelp
[Thu Apr 24 12:59:43 EDT 2025] CompareMetrics --INPUT testdata/picard/analysis/metrics/wgs_test1.2rows.raw_wgs_metrics --INPUT testdata/picard/analysis/metrics/wgs_test1.2rows.raw_wgs_metrics --IGNORE_HISTOGRAM_DIFFERENCES false --VERBOSITY INFO --QUIET false --VALIDATION_STRINGENCY STRICT --COMPRESSION_LEVEL 5 --MAX_RECORDS_IN_RAM 500000 --CREATE_INDEX false --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Thu Apr 24 12:59:43 EDT 2025] Executing as root@lovelace on Linux 6.1.0-28-amd64 amd64; OpenJDK 64-Bit Server VM 17.0.13+11-Debian-2deb12u1; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:null
INFO	2025-04-24 12:59:43	CompareMetrics	picard.analysis.CollectRawWgsMetrics$RawWgsMetrics Metric files testdata/picard/analysis/metrics/wgs_test1.2rows.raw_wgs_metrics and testdata/picard/analysis/metrics/wgs_test1.2rows.raw_wgs_metrics are equal
[Thu Apr 24 12:59:43 EDT 2025] picard.analysis.CompareMetrics done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=1073741824
[Thu Apr 24 12:59:43 EDT 2025] CompareMetrics --INPUT testdata/picard/analysis/metrics/wgs_test1.2rows.raw_wgs_metrics --INPUT testdata/picard/analysis/metrics/wgs_test2.2rows.raw_wgs_metrics --IGNORE_HISTOGRAM_DIFFERENCES false --VERBOSITY INFO --QUIET false --VALIDATION_STRINGENCY STRICT --COMPRESSION_LEVEL 5 --MAX_RECORDS_IN_RAM 500000 --CREATE_INDEX false --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Thu Apr 24 12:59:43 EDT 2025] Executing as root@lovelace on Linux 6.1.0-28-amd64 amd64; OpenJDK 64-Bit Server VM 17.0.13+11-Debian-2deb12u1; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:null
INFO	2025-04-24 12:59:43	CompareMetrics	picard.analysis.CollectRawWgsMetrics$RawWgsMetrics Metric files testdata/picard/analysis/metrics/wgs_test1.2rows.raw_wgs_metrics and testdata/picard/analysis/metrics/wgs_test2.2rows.raw_wgs_metrics are NOT equal
ERROR	2025-04-24 12:59:43	CompareMetrics	Key: 0 Metric: GENOME_TERRITORY values differ. Value1: 2745186694 Value2: 2745186691 Changed by -3.0 (relative change of -1.0928218494417632E-9)
ERROR	2025-04-24 12:59:43	CompareMetrics	Key: 0 Metric: PCT_EXC_BASEQ values differ. Value1: 0.122134 Value2: 0.122133 Changed by -1.000000000001E-6 (relative change of -8.187728232932681E-6)
ERROR	2025-04-24 12:59:43	CompareMetrics	Key: 1 Metric: GENOME_TERRITORY values differ. Value1: 2745186694 Value2: 2745186691 Changed by -3.0 (relative change of -1.0928218494417632E-9)
ERROR	2025-04-24 12:59:43	CompareMetrics	Key: 1 Metric: PCT_EXC_BASEQ values differ. Value1: 0.122134 Value2: 0.122133 Changed by -1.000000000001E-6 (relative change of -8.187728232932681E-6)
ERROR	2025-04-24 12:59:43	CompareMetrics	Metric Histograms differ
[Thu Apr 24 12:59:43 EDT 2025] picard.analysis.CompareMetrics done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1073741824
To get help, see http://broadinstitute.github.io/picard/index.html#GettingHelp
[Thu Apr 24 12:59:43 EDT 2025] CompareMetrics --INPUT testdata/picard/analysis/metrics/wgs_test1.raw_wgs_metrics --INPUT testdata/picard/analysis/metrics/wgs_test2.2rows.raw_wgs_metrics --IGNORE_HISTOGRAM_DIFFERENCES false --VERBOSITY INFO --QUIET false --VALIDATION_STRINGENCY STRICT --COMPRESSION_LEVEL 5 --MAX_RECORDS_IN_RAM 500000 --CREATE_INDEX false --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Thu Apr 24 12:59:43 EDT 2025] Executing as root@lovelace on Linux 6.1.0-28-amd64 amd64; OpenJDK 64-Bit Server VM 17.0.13+11-Debian-2deb12u1; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:null
INFO	2025-04-24 12:59:44	CompareMetrics	picard.analysis.CollectRawWgsMetrics$RawWgsMetrics Metric files testdata/picard/analysis/metrics/wgs_test1.raw_wgs_metrics and testdata/picard/analysis/metrics/wgs_test2.2rows.raw_wgs_metrics are NOT equal
ERROR	2025-04-24 12:59:44	CompareMetrics	Number of metric rows differ between /mounts/lovelace/software/picard/picard/testdata/picard/analysis/metrics/wgs_test1.raw_wgs_metrics and /mounts/lovelace/software/picard/picard/testdata/picard/analysis/metrics/wgs_test2.2rows.raw_wgs_metrics
[Thu Apr 24 12:59:44 EDT 2025] picard.analysis.CompareMetrics done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1073741824
To get help, see http://broadinstitute.github.io/picard/index.html#GettingHelp
[Thu Apr 24 12:59:44 EDT 2025] CompareMetrics --INPUT testdata/picard/analysis/metrics/wgs_test1.fingerprinting_summary_metrics --INPUT testdata/picard/analysis/metrics/wgs_test2.fingerprinting_summary_metrics --IGNORE_HISTOGRAM_DIFFERENCES false --VERBOSITY INFO --QUIET false --VALIDATION_STRINGENCY STRICT --COMPRESSION_LEVEL 5 --MAX_RECORDS_IN_RAM 500000 --CREATE_INDEX false --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Thu Apr 24 12:59:44 EDT 2025] Executing as root@lovelace on Linux 6.1.0-28-amd64 amd64; OpenJDK 64-Bit Server VM 17.0.13+11-Debian-2deb12u1; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:null
INFO	2025-04-24 12:59:44	CompareMetrics	picard.analysis.FingerprintingSummaryMetrics Metric files testdata/picard/analysis/metrics/wgs_test1.fingerprinting_summary_metrics and testdata/picard/analysis/metrics/wgs_test2.fingerprinting_summary_metrics are NOT equal
ERROR	2025-04-24 12:59:44	CompareMetrics	Key: 0 Metric: LL_EXPECTED_SAMPLE values differ. Value1: -151.58161 Value2: -1.015707 Changed by 150.56590300000002 (relative change of -0.9932992729131193)
ERROR	2025-04-24 12:59:44	CompareMetrics	Key: 0 Metric: LL_RANDOM_SAMPLE values differ. Value1: -152.354205 Value2: -1.788301 Changed by 150.56590400000002 (relative change of -0.9882622143576544)
[Thu Apr 24 12:59:44 EDT 2025] picard.analysis.CompareMetrics done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1073741824
To get help, see http://broadinstitute.github.io/picard/index.html#GettingHelp
[Thu Apr 24 12:59:44 EDT 2025] CompareMetrics --INPUT testdata/picard/analysis/metrics/test1.arrays_variant_calling_detail_metrics --INPUT testdata/picard/analysis/metrics/test2.arrays_variant_calling_detail_metrics --IGNORE_HISTOGRAM_DIFFERENCES false --VERBOSITY INFO --QUIET false --VALIDATION_STRINGENCY STRICT --COMPRESSION_LEVEL 5 --MAX_RECORDS_IN_RAM 500000 --CREATE_INDEX false --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Thu Apr 24 12:59:44 EDT 2025] Executing as root@lovelace on Linux 6.1.0-28-amd64 amd64; OpenJDK 64-Bit Server VM 17.0.13+11-Debian-2deb12u1; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:null
INFO	2025-04-24 12:59:44	CompareMetrics	picard.arrays.CollectArraysVariantCallingMetrics$ArraysVariantCallingDetailMetrics Metric files testdata/picard/analysis/metrics/test1.arrays_variant_calling_detail_metrics and testdata/picard/analysis/metrics/test2.arrays_variant_calling_detail_metrics are NOT equal
ERROR	2025-04-24 12:59:44	CompareMetrics	Key: 0 Metric: AUTOCALL_DATE values differ. Value1: 2020-03-27T08:21:00-0400 Value2: 2019-12-13T22:05:00-0500 
[Thu Apr 24 12:59:44 EDT 2025] picard.analysis.CompareMetrics done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1073741824
To get help, see http://broadinstitute.github.io/picard/index.html#GettingHelp
[Thu Apr 24 12:59:44 EDT 2025] CompareMetrics --INPUT testdata/picard/analysis/metrics/test1.arrays_variant_calling_detail_metrics --INPUT testdata/picard/analysis/metrics/test2.arrays_variant_calling_detail_metrics --METRICS_TO_IGNORE AUTOCALL_DATE --IGNORE_HISTOGRAM_DIFFERENCES false --VERBOSITY INFO --QUIET false --VALIDATION_STRINGENCY STRICT --COMPRESSION_LEVEL 5 --MAX_RECORDS_IN_RAM 500000 --CREATE_INDEX false --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Thu Apr 24 12:59:44 EDT 2025] Executing as root@lovelace on Linux 6.1.0-28-amd64 amd64; OpenJDK 64-Bit Server VM 17.0.13+11-Debian-2deb12u1; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:null
INFO	2025-04-24 12:59:44	CompareMetrics	picard.arrays.CollectArraysVariantCallingMetrics$ArraysVariantCallingDetailMetrics Metric files testdata/picard/analysis/metrics/test1.arrays_variant_calling_detail_metrics and testdata/picard/analysis/metrics/test2.arrays_variant_calling_detail_metrics are equal
[Thu Apr 24 12:59:44 EDT 2025] picard.analysis.CompareMetrics done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1073741824
[Thu Apr 24 12:59:44 EDT 2025] CompareMetrics --INPUT testdata/picard/analysis/metrics/test1.arrays_variant_calling_summary_metrics --INPUT testdata/picard/analysis/metrics/test2.arrays_variant_calling_summary_metrics --IGNORE_HISTOGRAM_DIFFERENCES false --VERBOSITY INFO --QUIET false --VALIDATION_STRINGENCY STRICT --COMPRESSION_LEVEL 5 --MAX_RECORDS_IN_RAM 500000 --CREATE_INDEX false --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Thu Apr 24 12:59:44 EDT 2025] Executing as root@lovelace on Linux 6.1.0-28-amd64 amd64; OpenJDK 64-Bit Server VM 17.0.13+11-Debian-2deb12u1; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:null
INFO	2025-04-24 12:59:44	CompareMetrics	picard.arrays.CollectArraysVariantCallingMetrics$ArraysVariantCallingSummaryMetrics Metric files testdata/picard/analysis/metrics/test1.arrays_variant_calling_summary_metrics and testdata/picard/analysis/metrics/test2.arrays_variant_calling_summary_metrics are equal
[Thu Apr 24 12:59:44 EDT 2025] picard.analysis.CompareMetrics done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1073741824
[Thu Apr 24 12:59:44 EDT 2025] CompareMetrics --INPUT testdata/picard/analysis/metrics/wgs_test1.2rows.fingerprinting_summary_metrics --INPUT testdata/picard/analysis/metrics/wgs_test2.2rows.fingerprinting_summary_metrics --IGNORE_HISTOGRAM_DIFFERENCES false --VERBOSITY INFO --QUIET false --VALIDATION_STRINGENCY STRICT --COMPRESSION_LEVEL 5 --MAX_RECORDS_IN_RAM 500000 --CREATE_INDEX false --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Thu Apr 24 12:59:44 EDT 2025] Executing as root@lovelace on Linux 6.1.0-28-amd64 amd64; OpenJDK 64-Bit Server VM 17.0.13+11-Debian-2deb12u1; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:null
INFO	2025-04-24 12:59:44	CompareMetrics	picard.analysis.FingerprintingSummaryMetrics Metric files testdata/picard/analysis/metrics/wgs_test1.2rows.fingerprinting_summary_metrics and testdata/picard/analysis/metrics/wgs_test2.2rows.fingerprinting_summary_metrics are NOT equal
ERROR	2025-04-24 12:59:44	CompareMetrics	Key: 0 Metric: SAMPLE values differ. Value1: NA12878 PLUMBING Value2: NA12345 PLUMBING 
ERROR	2025-04-24 12:59:44	CompareMetrics	Key: 0 Metric: LL_EXPECTED_SAMPLE values differ. Value1: -151.58161 Value2: -152.354205 Changed by -0.7725949999999955 (relative change of 0.0050968913709255066)
ERROR	2025-04-24 12:59:44	CompareMetrics	Key: 0 Metric: LL_RANDOM_SAMPLE values differ. Value1: -152.354205 Value2: -151.58161 Changed by 0.7725949999999955 (relative change of -0.005071044806410138)
ERROR	2025-04-24 12:59:44	CompareMetrics	Key: 0 Metric: LOD_EXPECTED_SAMPLE values differ. Value1: 0.772594 Value2: -0.772594 Changed by -1.545188 (relative change of -2.0)
ERROR	2025-04-24 12:59:44	CompareMetrics	Key: 1 Metric: SAMPLE values differ. Value1: NA12345 PLUMBING Value2: NA12878 PLUMBING 
ERROR	2025-04-24 12:59:44	CompareMetrics	Key: 1 Metric: LL_EXPECTED_SAMPLE values differ. Value1: -152.354205 Value2: -151.58161 Changed by 0.7725949999999955 (relative change of -0.005071044806410138)
ERROR	2025-04-24 12:59:44	CompareMetrics	Key: 1 Metric: LL_RANDOM_SAMPLE values differ. Value1: -151.58161 Value2: -152.354205 Changed by -0.7725949999999955 (relative change of 0.0050968913709255066)
ERROR	2025-04-24 12:59:44	CompareMetrics	Key: 1 Metric: LOD_EXPECTED_SAMPLE values differ. Value1: -0.772594 Value2: 0.772594 Changed by 1.545188 (relative change of -2.0)
[Thu Apr 24 12:59:44 EDT 2025] picard.analysis.CompareMetrics done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1073741824
To get help, see http://broadinstitute.github.io/picard/index.html#GettingHelp
[Thu Apr 24 12:59:44 EDT 2025] CompareMetrics --INPUT testdata/picard/analysis/metrics/wgs_test1.2rows.fingerprinting_summary_metrics --INPUT testdata/picard/analysis/metrics/wgs_test2.2rows.fingerprinting_summary_metrics --IGNORE_HISTOGRAM_DIFFERENCES false --KEY SAMPLE --VERBOSITY INFO --QUIET false --VALIDATION_STRINGENCY STRICT --COMPRESSION_LEVEL 5 --MAX_RECORDS_IN_RAM 500000 --CREATE_INDEX false --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Thu Apr 24 12:59:44 EDT 2025] Executing as root@lovelace on Linux 6.1.0-28-amd64 amd64; OpenJDK 64-Bit Server VM 17.0.13+11-Debian-2deb12u1; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:null
INFO	2025-04-24 12:59:44	CompareMetrics	picard.analysis.FingerprintingSummaryMetrics Metric files testdata/picard/analysis/metrics/wgs_test1.2rows.fingerprinting_summary_metrics and testdata/picard/analysis/metrics/wgs_test2.2rows.fingerprinting_summary_metrics are equal
[Thu Apr 24 12:59:44 EDT 2025] picard.analysis.CompareMetrics done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1073741824
[Thu Apr 24 12:59:44 EDT 2025] CompareMetrics --INPUT testdata/picard/analysis/metrics/wgs_test1.missing_metric.wgs_metrics --INPUT testdata/picard/analysis/metrics/wgs_test1.wgs_metrics --IGNORE_HISTOGRAM_DIFFERENCES false --VERBOSITY INFO --QUIET false --VALIDATION_STRINGENCY STRICT --COMPRESSION_LEVEL 5 --MAX_RECORDS_IN_RAM 500000 --CREATE_INDEX false --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Thu Apr 24 12:59:44 EDT 2025] Executing as root@lovelace on Linux 6.1.0-28-amd64 amd64; OpenJDK 64-Bit Server VM 17.0.13+11-Debian-2deb12u1; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:null
INFO	2025-04-24 12:59:44	CompareMetrics	picard.analysis.WgsMetrics Metric files testdata/picard/analysis/metrics/wgs_test1.missing_metric.wgs_metrics and testdata/picard/analysis/metrics/wgs_test1.wgs_metrics are NOT equal
ERROR	2025-04-24 12:59:44	CompareMetrics	Metric columns differ between /mounts/lovelace/software/picard/picard/testdata/picard/analysis/metrics/wgs_test1.missing_metric.wgs_metrics and /mounts/lovelace/software/picard/picard/testdata/picard/analysis/metrics/wgs_test1.wgs_metrics (HET_SNP_SENSITIVITY)
[Thu Apr 24 12:59:44 EDT 2025] picard.analysis.CompareMetrics done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1073741824
To get help, see http://broadinstitute.github.io/picard/index.html#GettingHelp
[Thu Apr 24 12:59:44 EDT 2025] CompareMetrics --INPUT testdata/picard/analysis/metrics/wgs_test1.missing_metric.wgs_metrics --INPUT testdata/picard/analysis/metrics/wgs_test1.wgs_metrics --METRICS_NOT_REQUIRED HET_SNP_SENSITIVITY --IGNORE_HISTOGRAM_DIFFERENCES false --VERBOSITY INFO --QUIET false --VALIDATION_STRINGENCY STRICT --COMPRESSION_LEVEL 5 --MAX_RECORDS_IN_RAM 500000 --CREATE_INDEX false --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Thu Apr 24 12:59:44 EDT 2025] Executing as root@lovelace on Linux 6.1.0-28-amd64 amd64; OpenJDK 64-Bit Server VM 17.0.13+11-Debian-2deb12u1; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:null
INFO	2025-04-24 12:59:44	CompareMetrics	picard.analysis.WgsMetrics Metric files testdata/picard/analysis/metrics/wgs_test1.missing_metric.wgs_metrics and testdata/picard/analysis/metrics/wgs_test1.wgs_metrics are equal
[Thu Apr 24 12:59:44 EDT 2025] picard.analysis.CompareMetrics done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1073741824
[Thu Apr 24 12:59:44 EDT 2025] CompareMetrics --INPUT testdata/picard/analysis/metrics/test1.arrays_variant_calling_detail_metrics --INPUT testdata/picard/analysis/metrics/test2.arrays_variant_calling_detail_metrics --METRIC_ALLOWABLE_RELATIVE_CHANGE NONEXISTENT_METRIC:0.3 --IGNORE_HISTOGRAM_DIFFERENCES false --VERBOSITY INFO --QUIET false --VALIDATION_STRINGENCY STRICT --COMPRESSION_LEVEL 5 --MAX_RECORDS_IN_RAM 500000 --CREATE_INDEX false --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Thu Apr 24 12:59:44 EDT 2025] Executing as root@lovelace on Linux 6.1.0-28-amd64 amd64; OpenJDK 64-Bit Server VM 17.0.13+11-Debian-2deb12u1; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:null
[Thu Apr 24 12:59:44 EDT 2025] picard.analysis.CompareMetrics done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1073741824
To get help, see http://broadinstitute.github.io/picard/index.html#GettingHelp
[Thu Apr 24 12:59:44 EDT 2025] CompareMetrics --INPUT testdata/picard/analysis/metrics/test1.arrays_variant_calling_detail_metrics --INPUT testdata/picard/analysis/metrics/test2.arrays_variant_calling_detail_metrics --METRICS_TO_IGNORE NONEXISTENT_METRIC --IGNORE_HISTOGRAM_DIFFERENCES false --VERBOSITY INFO --QUIET false --VALIDATION_STRINGENCY STRICT --COMPRESSION_LEVEL 5 --MAX_RECORDS_IN_RAM 500000 --CREATE_INDEX false --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Thu Apr 24 12:59:44 EDT 2025] Executing as root@lovelace on Linux 6.1.0-28-amd64 amd64; OpenJDK 64-Bit Server VM 17.0.13+11-Debian-2deb12u1; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:null
[Thu Apr 24 12:59:44 EDT 2025] picard.analysis.CompareMetrics done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1073741824
To get help, see http://broadinstitute.github.io/picard/index.html#GettingHelp
[Thu Apr 24 12:59:44 EDT 2025] CompareMetrics --INPUT testdata/picard/analysis/metrics/wgs_test1.wgs_metrics --INPUT testdata/picard/analysis/metrics/wgs_test1.raw_wgs_metrics --IGNORE_HISTOGRAM_DIFFERENCES false --VERBOSITY INFO --QUIET false --VALIDATION_STRINGENCY STRICT --COMPRESSION_LEVEL 5 --MAX_RECORDS_IN_RAM 500000 --CREATE_INDEX false --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Thu Apr 24 12:59:44 EDT 2025] Executing as root@lovelace on Linux 6.1.0-28-amd64 amd64; OpenJDK 64-Bit Server VM 17.0.13+11-Debian-2deb12u1; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:null
[Thu Apr 24 12:59:44 EDT 2025] picard.analysis.CompareMetrics done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1073741824
To get help, see http://broadinstitute.github.io/picard/index.html#GettingHelp