Index of /mounts/lovelace/software/metadmg/htslib/test

[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[DIR]annot-tsv/2025-08-12 10:59 -  
[ ]auxf#values.sam2025-08-12 10:59 751  
[ ]auxf#values_java.cram2025-08-12 10:59 5.0K 
[ ]auxf.fa2025-08-12 10:59 29  
[ ]auxf.fa.fai2025-08-12 10:59 18  
[DIR]base_mods/2025-08-12 10:59 -  
[DIR]bcf-sr/2025-08-12 10:59 -  
[DIR]bgzf_boundaries/2025-08-12 10:59 -  
[TXT]bgziptest.txt2025-08-12 10:59 15  
[ ]bgziptest.txt.gz2025-08-12 10:59 181  
[ ]bgziptest.txt.gz.gzi2025-08-12 10:59 88  
[ ]c1#bounds.sam2025-08-12 10:59 148  
[ ]c1#clip.sam2025-08-12 10:59 337  
[ ]c1#noseq.sam2025-08-12 10:59 433  
[ ]c1#pad1.sam2025-08-12 10:59 388  
[ ]c1#pad2.sam2025-08-12 10:59 527  
[ ]c1#pad3.sam2025-08-12 10:59 665  
[ ]c1#unknown.sam2025-08-12 10:59 429  
[ ]c1.fa2025-08-12 10:59 15  
[ ]c1.fa.fai2025-08-12 10:59 14  
[ ]c2#pad.sam2025-08-12 10:59 847  
[ ]c2.fa2025-08-12 10:59 14  
[ ]c2.fa.fai2025-08-12 10:59 12  
[ ]ce#1.sam2025-08-12 10:59 341  
[ ]ce#2.sam2025-08-12 10:59 645  
[ ]ce#5.sam2025-08-12 10:59 1.8K 
[ ]ce#5b.sam2025-08-12 10:59 1.8K 
[ ]ce#5b_java.cram2025-08-12 10:59 6.6K 
[ ]ce#1000.sam2025-08-12 10:59 315K 
[ ]ce#large_seq.sam2025-08-12 10:59 2.0M 
[ ]ce#supp.sam2025-08-12 10:59 547  
[ ]ce#tag_depadded.sam2025-08-12 10:59 1.6K 
[ ]ce#tag_padded.sam2025-08-12 10:59 1.6K 
[ ]ce#unmap.sam2025-08-12 10:59 1.3K 
[ ]ce#unmap1.sam2025-08-12 10:59 2.7K 
[ ]ce#unmap2.sam2025-08-12 10:59 5.4K 
[ ]ce.fa2025-08-12 10:59 1.0M 
[ ]ce.fa.fai2025-08-12 10:59 230  
[ ]colons.bam2025-08-12 10:59 268  
[ ]colons.bam.bai2025-08-12 10:59 424  
[TXT]compare_sam.pl2025-08-12 10:59 6.4K 
[TXT]cross_validate.sh2025-08-12 10:59 4.2K 
[ ]emptyfile2025-08-12 10:59 0  
[DIR]faidx/2025-08-12 10:59 -  
[DIR]fastq/2025-08-12 10:59 -  
[TXT]fastqs_README.txt2025-08-12 10:59 4.8K 
[TXT]fieldarith.c2025-08-12 10:59 2.4K 
[ ]fieldarith.sam2025-08-12 10:59 910  
[TXT]formatcols.vcf2025-08-12 10:59 241  
[TXT]formatmissing-out.vcf2025-08-12 10:59 226  
[TXT]formatmissing.vcf2025-08-12 10:59 226  
[DIR]fuzz/2025-08-12 10:59 -  
[TXT]header_syms.pl2025-08-12 10:59 3.5K 
[TXT]hfile.c2025-08-12 10:59 12K 
[TXT]hts_endian.c2025-08-12 10:59 17K 
[ ]index.bam.bai2025-08-12 10:59 776  
[ ]index.bam.csi2025-08-12 10:59 130  
[ ]index.bcf.csi2025-08-12 10:59 144  
[ ]index.cram.crai2025-08-12 10:59 83  
[ ]index.sam2025-08-12 10:59 53K 
[ ]index.sam.gz.bai2025-08-12 10:59 776  
[ ]index.sam.gz.csi2025-08-12 10:59 130  
[TXT]index.vcf2025-08-12 10:59 67K 
[ ]index.vcf.gz.csi2025-08-12 10:59 168  
[ ]index.vcf.gz.tbi2025-08-12 10:59 206  
[ ]index2.sam2025-08-12 10:59 477  
[ ]index_dos.sam2025-08-12 10:59 53K 
[DIR]longrefs/2025-08-12 10:59 -  
[DIR]maintainer/2025-08-12 10:59 -  
[ ]md#1.sam2025-08-12 10:59 1.0K 
[ ]md.fa2025-08-12 10:59 45  
[ ]md.fa.fai2025-08-12 10:59 13  
[TXT]modhdr.expected.vcf2025-08-12 10:59 148  
[ ]modhdr.vcf.gz2025-08-12 10:59 156  
[ ]modhdr.vcf.gz.csi2025-08-12 10:59 86  
[DIR]mpileup/2025-08-12 10:59 -  
[ ]no_hdr_sq_1.bam2025-08-12 10:59 1.7K 
[ ]no_hdr_sq_1.bam.csi2025-08-12 10:59 94  
[ ]no_hdr_sq_1.expected.sam2025-08-12 10:59 2.0K 
[TXT]noroundtrip-out.vcf2025-08-12 10:59 404  
[TXT]noroundtrip.vcf2025-08-12 10:59 367  
[TXT]pileup.c2025-08-12 10:59 7.3K 
[TXT]pileup_mod.c2025-08-12 10:59 7.0K 
[TXT]plugins-dlhts.c2025-08-12 10:59 5.0K 
[ ]range.bam2025-08-12 10:59 13K 
[ ]range.bam.bai2025-08-12 10:59 360  
[ ]range.cram2025-08-12 10:59 11K 
[ ]range.cram.crai2025-08-12 10:59 94  
[ ]range.out2025-08-12 10:59 3.4K 
[ ]range.out22025-08-12 10:59 4.7K 
[ ]realn01.fa2025-08-12 10:59 719  
[ ]realn01.fa.fai2025-08-12 10:59 21  
[ ]realn01.sam2025-08-12 10:59 1.8K 
[ ]realn01_exp-a.sam2025-08-12 10:59 2.1K 
[ ]realn01_exp-e.sam2025-08-12 10:59 2.1K 
[ ]realn01_exp.sam2025-08-12 10:59 2.1K 
[ ]realn02-r.sam2025-08-12 10:59 3.7K 
[ ]realn02.fa2025-08-12 10:59 4.2K 
[ ]realn02.fa.fai2025-08-12 10:59 17  
[ ]realn02.sam2025-08-12 10:59 2.8K 
[ ]realn02_exp-a.sam2025-08-12 10:59 3.7K 
[ ]realn02_exp-e.sam2025-08-12 10:59 3.7K 
[ ]realn02_exp.sam2025-08-12 10:59 3.7K 
[ ]realn03.fa2025-08-12 10:59 16  
[ ]realn03.fa.fai2025-08-12 10:59 14  
[ ]realn03.sam2025-08-12 10:59 138  
[ ]realn03_exp.sam2025-08-12 10:59 172  
[DIR]ref_cache/2025-08-12 10:59 -  
[TXT]sam.c2025-08-12 10:59 83K 
[DIR]sam_filter/2025-08-12 10:59 -  
[TXT]simple_test_driver.sh2025-08-12 10:59 5.6K 
[ ]tabix.out2025-08-12 10:59 98  
[DIR]tabix/2025-08-12 10:59 -  
[TXT]test-bcf-sr.c2025-08-12 10:59 11K 
[TXT]test-bcf-sr.pl2025-08-12 10:59 17K 
[TXT]test-bcf-translate.c2025-08-12 10:59 8.8K 
[ ]test-bcf-translate.out2025-08-12 10:59 869  
[TXT]test-bcf_set_variant_type.c2025-08-12 10:59 4.3K 
[TXT]test-logging.pl2025-08-12 10:59 2.5K 
[TXT]test-parse-reg.c2025-08-12 10:59 6.9K 
[TXT]test-regidx.c2025-08-12 10:59 17K 
[TXT]test-vcf-api.c2025-08-12 10:59 31K 
[ ]test-vcf-api.out2025-08-12 10:59 2.0K 
[TXT]test-vcf-hdr-in.vcf2025-08-12 10:59 2.0K 
[ ]test-vcf-hdr.out2025-08-12 10:59 1.3K 
[TXT]test-vcf-sweep.c2025-08-12 10:59 3.8K 
[ ]test-vcf-sweep.out2025-08-12 10:59 92  
[TXT]test.pl2025-08-12 10:59 66K 
[TXT]test_bgzf.c2025-08-12 10:59 36K 
[TXT]test_expr.c2025-08-12 10:59 12K 
[TXT]test_faidx.c2025-08-12 10:59 16K 
[TXT]test_index.c2025-08-12 10:59 2.8K 
[TXT]test_introspection.c2025-08-12 10:59 3.2K 
[TXT]test_kfunc.c2025-08-12 10:59 3.6K 
[TXT]test_khash.c2025-08-12 10:59 13K 
[TXT]test_kstring.c2025-08-12 10:59 18K 
[TXT]test_mod.c2025-08-12 10:59 7.4K 
[TXT]test_nibbles.c2025-08-12 10:59 4.4K 
[TXT]test_realn.c2025-08-12 10:59 4.9K 
[TXT]test_str2int.c2025-08-12 10:59 8.7K 
[TXT]test_time_funcs.c2025-08-12 10:59 4.5K 
[TXT]test_view.c2025-08-12 10:59 15K 
[TXT]thrash_threads1.c2025-08-12 10:59 1.6K 
[TXT]thrash_threads2.c2025-08-12 10:59 1.6K 
[TXT]thrash_threads3.c2025-08-12 10:59 1.7K 
[TXT]thrash_threads4.c2025-08-12 10:59 2.3K 
[TXT]thrash_threads5.c2025-08-12 10:59 2.1K 
[TXT]thrash_threads6.c2025-08-12 10:59 3.4K 
[TXT]thrash_threads7.c2025-08-12 10:59 3.6K 
[TXT]thread_pool.md2025-08-12 10:59 2.9K 
[TXT]usepublic.cpp2025-08-12 10:59 2.4K 
[ ]vcf44_1.expected2025-08-12 10:59 1.5K 
[TXT]vcf44_1.vcf2025-08-12 10:59 1.5K 
[TXT]vcf_meta_meta.vcf2025-08-12 10:59 427  
[TXT]with-shlib.sh2025-08-12 10:59 2.3K 
[ ]xx#MD.sam2025-08-12 10:59 1.0K 
[ ]xx#MD2.sam2025-08-12 10:59 1.1K 
[ ]xx#blank.sam2025-08-12 10:59 71  
[ ]xx#large_aux.sam2025-08-12 10:59 884K 
[ ]xx#large_aux2.sam2025-08-12 10:59 651  
[ ]xx#large_aux_java.cram2025-08-12 10:59 22K 
[ ]xx#minimal.sam2025-08-12 10:59 254  
[ ]xx#pair.sam2025-08-12 10:59 304  
[ ]xx#repeated.sam2025-08-12 10:59 298  
[ ]xx#rg.sam2025-08-12 10:59 517  
[ ]xx#tlen.sam2025-08-12 10:59 1.0K 
[ ]xx#tlen2.sam2025-08-12 10:59 1.1K 
[ ]xx#triplet.sam2025-08-12 10:59 267  
[ ]xx#u.sam2025-08-12 10:59 134  
[ ]xx#unsorted.sam2025-08-12 10:59 320  
[ ]xx.fa2025-08-12 10:59 86  
[ ]xx.fa.fai2025-08-12 10:59 44  
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