=heVddlZddlZddlZddlmZgdZddgZdZdZdZ d Z d Z y) N)logcolor)dry_runorderinput_fastq_pathinput_manifest output_paththreadssoftwareargsc|ddjdd}|jtjdtjy)NGENERALr"z--> Manifest check successful!)replaceinforSUCCESSENDC)configlogger manifest_paths C/mounts/lovelace/software/shotgun-workflow/dev/workflow/validate.pyvalidate_manifest_filesr sE9%&67??BGM KK8##$$B8==/RSc d|vrq|jtjdtj|jdtjdtjdt d|dD]}|t vs |jtjdtj|jdtj|tjdtjdtjd t dt D]}||dvs |jtjdtj|jd tjdtjd tj|tjd t d|D]^}|d vr ||D]}|tvs |jtjdtj|jdtj|tjdtj|tjd t dtD]}|||vs |dk7s|jtjdtj|jd tj|tjd tj|tjd t da|jtjdtjy)Nr z--> Config check failed!z,It looks like your config file is missing a z [GENERAL]z6 section. Please refer to the README.md for more help.z The option z! is not a valid config option in z.. Please refer to the README.md for more help.zConfig section z is missing the z5 option. Please refer to the README.md for more help.)r DEFAULTmodez--> Config check successful!) errorrERRORr REFERENCEexitVALID_GENERAL_OPTSVALID_STEP_OPTSrr)rroptsections rvalidate_config_optionsr&sz ''? OP CHDVDVCWW`aianan`opfg h Qi  ( ( LLHNN++CHMM?S T LL;x'9'9&:3% NopxqCqCpDDMNVN[N[M\\JK L G ! " fY' ' LLHNN++CHMM?S T LL?8+=+=*>i Vfgogygyfz{~zAIANAN@OODE F G "  , , go-LLHNN#33KHMM?![\LL;x/A/A.B3% VwyAyKyKxLMTLUV^VcVcUddR"STG ' 'fWo-f} '77OPXP]P]%_` x7I7I6J7)T\TaTaSbbrs{tFtFsGHKGLMUMZMZL[[P&QRQ '  KK8##$$@PQrc H|dd}tjj|jddrr|j t j dt j|j dt j|t jdtd|dd }tjj|jddsr|j t j dt j|j d t j|t jd td|dd }tjj|jddsr|j t j dt j|j d t j|t jd td|dd}|dvrr|j t j dt j|j dt j|t jdtd|ddjD]}||vs|j t j dt j|j dt j|t jdt jdt jd td|ddjD]}||d|vs||d}|j t j dt j|j dt j|t jdt j|t jd td|jt jdt jy)Nr rrrz--> Argument check failed!z Output path z1 already exists. Please double check your config.rrz Input path z1 does not exist. Please double check your config.rzInput manifest r)TFTrueFalsez,'dry_run' should be a True/False value, not z". Please double check your config.rz Step section z is in your z@ option, but is not configured. Please double check your config.r z Software z in section z/ is not valid. Please double check your config.z--> Argument check successful!) ospathexistsrrrrrr r!splitrr) rsoftware_dictionaryrrrrrr%failed_softwares r validate_argsr02s#M2K ww~~k))#b12 ''A(--QR |H$6$6#7 }X]]OTEF G Qi();< 77>>*223r: ; ''A(--QR {8#5#5"67G6HXIJ K QI&'78N 77>>.00R8 9 ''A(--QR x'9'9&:>:J8==/ZKL M QY *G44 ''A(--QR CHDVDVCWX_W`aianan`opRS T Q)$W-335 & LLHNN++Ehmm_U V LL=););( Additional Argument error!z"It looks like you are including a z arguement in your config step z?. This arguement is generated, and you don't need to supply it.r)rrrrr r!)stepname unneeded_argsadditional_step_argsrargs rvalidate_additional_argsr7asU!9, , LLHNN++I(--Y Z LL=h>P>P=QRUQVW_WdWdVefEFNFXFXEYZbYcdldqdqcrrqr s G rc|D]}tj|jdk7r&|jtj dtj |jdtj|jtj dtd|jtjdtj y)Nz--> Environment check failed!zIt looks like zL not in your path. You might need to load a module, or install the software.rz!--> Environment check successful!) shutilwhich software_namerrrrr r!rr)software_stepsrsteps r validate_envr>hs <<** +t 3  LLHNN++HX Y LL>(*<*<)=d>P>P=QRZR_R_Q`amn o G  KK8##$$Ehmm_UVr) r9r*csv workflow.logrr"r#rr&r0r7r>rrrBs?!jf% !RF-T^Wr