Constant Field Values

Contents

• gov.nih.*
• ngs.*

gov.nih.*

gov.nih.nlm.ncbi.ngs.LibDependencies

Modifier and Type	Constant Field	Value
public static final String	NCBI_VDB	"ncbi-ngs"
public static final String	NGS_SDK	"ngs-sdk"

ngs.*

ngs.Alignment

Modifier and Type	Constant Field	Value
public static final int	all	3
public static final int	clipLeft	0
public static final int	clipRight	1
public static final int	maxMapQuality	8
public static final int	minMapQuality	4
public static final int	noWraparound	16
public static final int	passDuplicates	2
public static final int	passFailed	1
public static final int	primaryAlignment	1
public static final int	secondaryAlignment	2
public static final int	startWithinSlice	32

ngs.PileupEvent

Modifier and Type	Constant Field	Value
public static final int	alignment_minus_strand	32
public static final int	alignment_start	128
public static final int	alignment_stop	64
public static final int	deletion	2
public static final int	insertion	8
public static final int	insertion_before_deletion	10
public static final int	insertion_before_match	8
public static final int	insertion_before_mismatch	9
public static final int	intron_minus	2
public static final int	intron_plus	1
public static final int	intron_unknown	3
public static final int	match	0
public static final int	mismatch	1
public static final int	normal_indel	0
public static final int	read_gap	5
public static final int	read_overlap	4
public static final int	replacement	10

ngs.Read

Modifier and Type	Constant Field	Value
public static final int	aligned	3
public static final int	all	7
public static final int	fullyAligned	1
public static final int	partiallyAligned	2
public static final int	unaligned	4

ngs.Statistics

Modifier and Type	Constant Field	Value
public static final int	int64	2
public static final int	none	0
public static final int	real	4
public static final int	string	1
public static final int	uint64	3