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| Name | Last modified | Size | Description |
|---|---|---|---|---|
| Parent Directory | - | ||
| AUTHORS | 2023-11-30 16:43 | 1.3K | |
| BOWTIE2_VERSION | 2023-11-30 16:43 | 6 | |
| CMakeLists.txt | 2023-11-30 16:43 | 8.5K | |
| LICENSE | 2023-11-30 16:43 | 34K | |
| MANUAL | 2023-11-30 16:43 | 85K | |
| MANUAL.markdown | 2023-11-30 16:43 | 114K | |
| Makefile | 2023-11-30 16:43 | 18K | |
| NEWS | 2023-11-30 16:43 | 32K | |
| README.md | 2023-11-30 16:43 | 6.1K | |
| TUTORIAL | 2023-11-30 16:43 | 248 | |
| aligner_bt.cpp | 2023-11-30 16:43 | 53K | |
| aligner_bt.h | 2023-11-30 16:43 | 30K | |
| aligner_cache.cpp | 2023-11-30 16:43 | 6.9K | |
| aligner_cache.h | 2023-11-30 16:43 | 25K | |
| aligner_driver.cpp | 2023-11-30 16:43 | 12K | |
| aligner_driver.h | 2023-11-30 16:43 | 10K | |
| aligner_metrics.h | 2023-11-30 16:43 | 11K | |
| aligner_report.h | 2023-11-30 16:43 | 1.0K | |
| aligner_result.cpp | 2023-11-30 16:43 | 50K | |
| aligner_result.h | 2023-11-30 16:43 | 52K | |
| aligner_seed.cpp | 2023-11-30 16:43 | 66K | |
| aligner_seed.h | 2023-11-30 16:43 | 51K | |
| aligner_seed2.cpp | 2023-11-30 16:43 | 102K | |
| aligner_seed2.h | 2023-11-30 16:43 | 69K | |
| aligner_seed_policy.cpp | 2023-11-30 16:43 | 27K | |
| aligner_seed_policy.h | 2023-11-30 16:43 | 7.4K | |
| aligner_sw.cpp | 2023-11-30 16:43 | 102K | |
| aligner_sw.h | 2023-11-30 16:43 | 25K | |
| aligner_sw_common.h | 2023-11-30 16:43 | 8.2K | |
| aligner_sw_driver.cpp | 2023-11-30 16:43 | 83K | |
| aligner_sw_driver.h | 2023-11-30 16:43 | 20K | |
| aligner_sw_nuc.h | 2023-11-30 16:43 | 7.0K | |
| aligner_swsse.cpp | 2023-11-30 16:43 | 2.7K | |
| aligner_swsse.h | 2023-11-30 16:43 | 15K | |
| aligner_swsse_ee_i16.cpp | 2023-11-30 16:43 | 61K | |
| aligner_swsse_ee_u8.cpp | 2023-11-30 16:43 | 60K | |
| aligner_swsse_loc_i16.cpp | 2023-11-30 16:43 | 72K | |
| aligner_swsse_loc_u8.cpp | 2023-11-30 16:43 | 70K | |
| aln_sink.cpp | 2023-11-30 16:43 | 74K | |
| aln_sink.h | 2023-11-30 16:43 | 45K | |
| alphabet.cpp | 2023-11-30 16:43 | 8.3K | |
| alphabet.h | 2023-11-30 16:43 | 3.7K | |
| assert_helpers.h | 2023-11-30 16:43 | 9.3K | |
| banded.cpp | 2023-11-30 16:43 | 823 | |
| banded.h | 2023-11-30 16:43 | 1.2K | |
| binary_sa_search.h | 2023-11-30 16:43 | 3.5K | |
| bitpack.h | 2023-11-30 16:43 | 1.5K | |
| blockwise_sa.h | 2023-11-30 16:43 | 37K | |
| bowtie2 | 2023-11-30 16:43 | 26K | |
| bowtie2-align-l | 2023-11-30 16:47 | 14M | |
| bowtie2-align-s | 2023-11-30 16:46 | 14M | |
| bowtie2-build | 2023-11-30 16:43 | 3.9K | |
| bowtie2-build-l | 2023-11-30 16:45 | 5.5M | |
| bowtie2-build-s | 2023-11-30 16:44 | 5.4M | |
| bowtie2-inspect | 2023-11-30 16:43 | 2.7K | |
| bowtie2-inspect-l | 2023-11-30 16:48 | 3.2M | |
| bowtie2-inspect-s | 2023-11-30 16:48 | 3.2M | |
| bowtie_build_main.cpp | 2023-11-30 16:43 | 2.0K | |
| bowtie_main.cpp | 2023-11-30 16:43 | 2.0K | |
| bt2_build.cpp | 2023-11-30 16:43 | 24K | |
| bt2_dp.cpp | 2023-11-30 16:43 | 25K | |
| bt2_idx.cpp | 2023-11-30 16:43 | 8.1K | |
| bt2_idx.h | 2023-11-30 16:43 | 98K | |
| bt2_inspect.cpp | 2023-11-30 16:43 | 16K | |
| bt2_io.cpp | 2023-11-30 16:43 | 30K | |
| bt2_locks.cpp | 2023-11-30 16:43 | 920 | |
| bt2_locks.h | 2023-11-30 16:43 | 1.5K | |
| bt2_search.cpp | 2023-11-30 16:43 | 200K | |
| bt2_search.h | 2023-11-30 16:43 | 1.2K | |
| bt2_util.cpp | 2023-11-30 16:43 | 6.3K | |
| btypes.h | 2023-11-30 16:43 | 1.3K | |
| ccnt_lut.cpp | 2023-11-30 16:43 | 14K | |
| concurrentqueue.h | 2023-11-30 16:43 | 149K | |
| cpu_numa_info.cpp | 2023-11-30 16:43 | 288 | |
| cpu_numa_info.h | 2023-11-30 16:43 | 109 | |
| diff_sample.cpp | 2023-11-30 16:43 | 4.5K | |
| diff_sample.h | 2023-11-30 16:43 | 29K | |
| doc/ | 2023-11-30 16:43 | - | |
| dp_framer.cpp | 2023-11-30 16:43 | 36K | |
| dp_framer.h | 2023-11-30 16:43 | 9.2K | |
| ds.cpp | 2023-11-30 16:43 | 3.1K | |
| ds.h | 2023-11-30 16:43 | 86K | |
| edit.cpp | 2023-11-30 16:43 | 12K | |
| edit.h | 2023-11-30 16:43 | 8.0K | |
| endian_swap.h | 2023-11-30 16:43 | 3.9K | |
| example/ | 2023-11-30 16:43 | - | |
| fast_mutex.h | 2023-11-30 16:43 | 6.8K | |
| filebuf.h | 2023-11-30 16:43 | 22K | |
| formats.h | 2023-11-30 16:43 | 1.2K | |
| group_walk.cpp | 2023-11-30 16:43 | 759 | |
| group_walk.h | 2023-11-30 16:43 | 36K | |
| ival_list.cpp | 2023-11-30 16:43 | 5.1K | |
| ival_list.h | 2023-11-30 16:43 | 6.5K | |
| limit.cpp | 2023-11-30 16:43 | 1.8K | |
| limit.h | 2023-11-30 16:43 | 1.3K | |
| ls.cpp | 2023-11-30 16:43 | 3.6K | |
| ls.h | 2023-11-30 16:43 | 12K | |
| mask.cpp | 2023-11-30 16:43 | 1.0K | |
| mask.h | 2023-11-30 16:43 | 2.1K | |
| mem_ids.h | 2023-11-30 16:43 | 1.2K | |
| mm.h | 2023-11-30 16:43 | 1.2K | |
| multikey_qsort.cpp | 2023-11-30 16:43 | 858 | |
| multikey_qsort.h | 2023-11-30 16:43 | 38K | |
| opts.h | 2023-11-30 16:43 | 6.8K | |
| outq.cpp | 2023-11-30 16:43 | 6.4K | |
| outq.h | 2023-11-30 16:43 | 4.1K | |
| pat.cpp | 2023-11-30 16:43 | 50K | |
| pat.h | 2023-11-30 16:43 | 36K | |
| pe.cpp | 2023-11-30 16:43 | 31K | |
| pe.h | 2023-11-30 16:43 | 9.5K | |
| presets.cpp | 2023-11-30 16:43 | 2.9K | |
| presets.h | 2023-11-30 16:43 | 1.5K | |
| processor_support.h | 2023-11-30 16:43 | 2.2K | |
| qual.cpp | 2023-11-30 16:43 | 3.9K | |
| qual.h | 2023-11-30 16:43 | 6.4K | |
| random_source.cpp | 2023-11-30 16:43 | 3.2K | |
| random_source.h | 2023-11-30 16:43 | 5.3K | |
| random_util.cpp | 2023-11-30 16:43 | 907 | |
| random_util.h | 2023-11-30 16:43 | 5.8K | |
| read.h | 2023-11-30 16:43 | 13K | |
| read_qseq.cpp | 2023-11-30 16:43 | 5.8K | |
| ref_coord.cpp | 2023-11-30 16:43 | 1.0K | |
| ref_coord.h | 2023-11-30 16:43 | 9.8K | |
| ref_read.cpp | 2023-11-30 16:43 | 8.1K | |
| ref_read.h | 2023-11-30 16:43 | 8.2K | |
| reference.cpp | 2023-11-30 16:43 | 20K | |
| reference.h | 2023-11-30 16:43 | 5.7K | |
| sam.cpp | 2023-11-30 16:43 | 24K | |
| sam.h | 2023-11-30 16:43 | 14K | |
| scoring.cpp | 2023-11-30 16:43 | 9.2K | |
| scoring.h | 2023-11-30 16:43 | 15K | |
| scripts/ | 2023-11-30 16:43 | - | |
| search_globals.h | 2023-11-30 16:43 | 1.2K | |
| sequence_io.h | 2023-11-30 16:43 | 3.6K | |
| shmem.cpp | 2023-11-30 16:43 | 1.3K | |
| shmem.h | 2023-11-30 16:43 | 4.9K | |
| simple_func.cpp | 2023-11-30 16:43 | 2.3K | |
| simple_func.h | 2023-11-30 16:43 | 3.5K | |
| sse_util.cpp | 2023-11-30 16:43 | 1.0K | |
| sse_util.h | 2023-11-30 16:43 | 14K | |
| sse_wrap.h | 2023-11-30 16:43 | 9.0K | |
| sstring.cpp | 2023-11-30 16:43 | 5.3K | |
| sstring.h | 2023-11-30 16:43 | 74K | |
| str_util.h | 2023-11-30 16:43 | 1.4K | |
| third_party/ | 2023-11-30 16:43 | - | |
| threading.h | 2023-11-30 16:43 | 5.2K | |
| threadpool.h | 2023-11-30 16:43 | 3.7K | |
| timer.h | 2023-11-30 16:43 | 4.6K | |
| tokenize.h | 2023-11-30 16:43 | 1.7K | |
| unique.cpp | 2023-11-30 16:43 | 2.3K | |
| unique.h | 2023-11-30 16:43 | 14K | |
| util.h | 2023-11-30 16:43 | 1.4K | |
| word_io.h | 2023-11-30 16:43 | 4.5K | |
| zbox.h | 2023-11-30 16:43 | 2.7K | |
| zstd_decompress.cpp | 2023-11-30 16:43 | 3.6K | |
| zstd_decompress.h | 2023-11-30 16:43 | 748 | |