# This file created by conda-build 3.24.0
# meta.yaml template originally from:
# /opt/recipe, last modified Thu May  4 08:32:32 2023
# ------------------------------------------------

package:
  name: unifrac
  version: '1.3'
source:
  sha256: e8cc37c3d5aaa31494c218df8a336eae135049d6840023d057da4fda8c4a4377
  url: https://github.com/biocore/unifrac/archive/refs/tags/1.3.tar.gz
build:
  number: '0'
  string: py38hbff2b2d_0
requirements:
  build:
    - _libgcc_mutex 0.1 conda_forge
    - _openmp_mutex 4.5 2_gnu
    - binutils_impl_linux-64 2.39 he00db2b_1
    - binutils_linux-64 2.39 h5fc0e48_13
    - gcc_impl_linux-64 10.4.0 h5231bdf_19
    - gcc_linux-64 10.4.0 h9215b83_13
    - kernel-headers_linux-64 2.6.32 he073ed8_15
    - ld_impl_linux-64 2.39 hcc3a1bd_1
    - libgcc-devel_linux-64 10.4.0 hd38fd1e_19
    - libgcc-ng 12.2.0 h65d4601_19
    - libgomp 12.2.0 h65d4601_19
    - libsanitizer 10.4.0 h5246dfb_19
    - libstdcxx-ng 12.2.0 h46fd767_19
    - sysroot_linux-64 2.12 he073ed8_15
  host:
    - _libgcc_mutex 0.1 conda_forge
    - _openmp_mutex 4.5 2_gnu
    - asttokens 2.2.1 pyhd8ed1ab_0
    - backcall 0.2.0 pyh9f0ad1d_0
    - backports 1.0 pyhd8ed1ab_3
    - backports.functools_lru_cache 1.6.4 pyhd8ed1ab_0
    - biom-format 2.1.14 py38h1de0b5d_2
    - brotli 1.0.9 h166bdaf_8
    - brotli-bin 1.0.9 h166bdaf_8
    - brotlipy 0.7.0 py38h0a891b7_1005
    - bzip2 1.0.8 h7f98852_4
    - c-ares 1.18.1 h7f98852_0
    - ca-certificates 2022.12.7 ha878542_0
    - cachecontrol 0.12.11 pyhd8ed1ab_1
    - cached-property 1.5.2 hd8ed1ab_1
    - cached_property 1.5.2 pyha770c72_1
    - certifi 2022.12.7 pyhd8ed1ab_0
    - cffi 1.15.1 py38h4a40e3a_3
    - charset-normalizer 3.1.0 pyhd8ed1ab_0
    - click 8.1.3 unix_pyhd8ed1ab_2
    - colorama 0.4.6 pyhd8ed1ab_0
    - contourpy 1.0.7 py38hfbd4bf9_0
    - cryptography 40.0.2 py38h3d167d9_0
    - cycler 0.11.0 pyhd8ed1ab_0
    - cython 0.29.34 py38h8dc9893_0
    - decorator 5.1.1 pyhd8ed1ab_0
    - exceptiongroup 1.1.1 pyhd8ed1ab_0
    - executing 1.2.0 pyhd8ed1ab_0
    - fonttools 4.39.3 py38h1de0b5d_0
    - freetype 2.12.1 hca18f0e_1
    - h5py 3.8.0 nompi_py38h43830be_101
    - hdf5 1.14.0 nompi_hb72d44e_103
    - hdmedians 0.14.2 py38h26c90d9_3
    - idna 3.4 pyhd8ed1ab_0
    - importlib-metadata 6.6.0 pyha770c72_0
    - importlib-resources 5.12.0 pyhd8ed1ab_0
    - importlib_resources 5.12.0 pyhd8ed1ab_0
    - iniconfig 2.0.0 pyhd8ed1ab_0
    - iow 1.0.5 py38h8ded8fe_2
    - ipython 8.12.1 pyh41d4057_0
    - jedi 0.18.2 pyhd8ed1ab_0
    - keyutils 1.6.1 h166bdaf_0
    - kiwisolver 1.4.4 py38h43d8883_1
    - krb5 1.20.1 h81ceb04_0
    - lcms2 2.15 haa2dc70_1
    - ld_impl_linux-64 2.40 h41732ed_0
    - lerc 4.0.0 h27087fc_0
    - libaec 1.0.6 hcb278e6_1
    - libblas 3.9.0 16_linux64_openblas
    - libbrotlicommon 1.0.9 h166bdaf_8
    - libbrotlidec 1.0.9 h166bdaf_8
    - libbrotlienc 1.0.9 h166bdaf_8
    - libcblas 3.9.0 16_linux64_openblas
    - libcurl 8.0.1 h588be90_0
    - libdeflate 1.18 h0b41bf4_0
    - libedit 3.1.20191231 he28a2e2_2
    - libev 4.33 h516909a_1
    - libffi 3.4.2 h7f98852_5
    - libgcc-ng 12.2.0 h65d4601_19
    - libgfortran-ng 12.2.0 h69a702a_19
    - libgfortran5 12.2.0 h337968e_19
    - libgomp 12.2.0 h65d4601_19
    - libjpeg-turbo 2.1.5.1 h0b41bf4_0
    - liblapack 3.9.0 16_linux64_openblas
    - liblapacke 3.9.0 16_linux64_openblas
    - libnghttp2 1.52.0 h61bc06f_0
    - libnsl 2.0.0 h7f98852_0
    - libopenblas 0.3.21 pthreads_h78a6416_3
    - libpng 1.6.39 h753d276_0
    - libsqlite 3.40.0 h753d276_1
    - libssh2 1.10.0 hf14f497_3
    - libstdcxx-ng 12.2.0 h46fd767_19
    - libtiff 4.5.0 ha587672_6
    - libuuid 2.38.1 h0b41bf4_0
    - libwebp-base 1.3.0 h0b41bf4_0
    - libxcb 1.13 h7f98852_1004
    - libzlib 1.2.13 h166bdaf_4
    - lockfile 0.12.2 py_1
    - lz4 4.3.2 py38hd012fdc_0
    - lz4-c 1.9.4 hcb278e6_0
    - matplotlib-base 3.7.1 py38hd6c3c57_0
    - matplotlib-inline 0.1.6 pyhd8ed1ab_0
    - msgpack-python 1.0.5 py38hfbd4bf9_0
    - munkres 1.1.4 pyh9f0ad1d_0
    - natsort 8.3.1 pyhd8ed1ab_0
    - ncurses 6.3 h27087fc_1
    - numpy 1.24.3 py38h59b608b_0
    - openjpeg 2.5.0 hfec8fc6_2
    - openssl 3.1.0 hd590300_3
    - packaging 23.1 pyhd8ed1ab_0
    - pandas 2.0.1 py38h01efb38_0
    - parso 0.8.3 pyhd8ed1ab_0
    - pexpect 4.8.0 pyh1a96a4e_2
    - pickleshare 0.7.5 py_1003
    - pillow 9.5.0 py38h961100d_0
    - pip 23.1.2 pyhd8ed1ab_0
    - platformdirs 3.5.0 pyhd8ed1ab_0
    - pluggy 1.0.0 pyhd8ed1ab_5
    - pooch 1.7.0 pyha770c72_3
    - prompt-toolkit 3.0.38 pyha770c72_0
    - prompt_toolkit 3.0.38 hd8ed1ab_0
    - pthread-stubs 0.4 h36c2ea0_1001
    - ptyprocess 0.7.0 pyhd3deb0d_0
    - pure_eval 0.2.2 pyhd8ed1ab_0
    - pycparser 2.21 pyhd8ed1ab_0
    - pygments 2.15.1 pyhd8ed1ab_0
    - pyopenssl 23.1.1 pyhd8ed1ab_0
    - pyparsing 3.0.9 pyhd8ed1ab_0
    - pysocks 1.7.1 pyha2e5f31_6
    - pytest 7.3.1 pyhd8ed1ab_0
    - python 3.8.16 he550d4f_1_cpython
    - python-dateutil 2.8.2 pyhd8ed1ab_0
    - python-tzdata 2023.3 pyhd8ed1ab_0
    - python_abi 3.8 3_cp38
    - pytz 2023.3 pyhd8ed1ab_0
    - readline 8.2 h8228510_1
    - requests 2.29.0 pyhd8ed1ab_0
    - scikit-bio 0.5.8 py38h7e4f40d_1
    - scipy 1.10.1 py38h59f1b5f_0
    - setuptools 67.7.2 pyhd8ed1ab_0
    - six 1.16.0 pyh6c4a22f_0
    - stack_data 0.6.2 pyhd8ed1ab_0
    - tk 8.6.12 h27826a3_0
    - tomli 2.0.1 pyhd8ed1ab_0
    - traitlets 5.9.0 pyhd8ed1ab_0
    - typing-extensions 4.5.0 hd8ed1ab_0
    - typing_extensions 4.5.0 pyha770c72_0
    - unicodedata2 15.0.0 py38h0a891b7_0
    - unifrac-binaries 1.3.1 h73f19ed_0
    - urllib3 1.26.15 pyhd8ed1ab_0
    - wcwidth 0.2.6 pyhd8ed1ab_0
    - wheel 0.40.0 pyhd8ed1ab_0
    - xorg-libxau 1.0.9 h7f98852_0
    - xorg-libxdmcp 1.1.3 h7f98852_0
    - xz 5.2.6 h166bdaf_0
    - zipp 3.15.0 pyhd8ed1ab_0
    - zlib 1.2.13 h166bdaf_4
    - zstd 1.5.2 h3eb15da_6
  run:
    - biom-format
    - h5py <3.0.0 | >3.3.0
    - iow
    - libgcc-ng >=12
    - numpy >=1.24.3,<2.0a0
    - python >=3.8,<3.9.0a0
    - python_abi 3.8.* *_cp38
    - scikit-bio >=0.5.8
    - scipy >=1.9.0
    - unifrac-binaries >=1.3
test:
  commands:
    - ssu --help
    - faithpd --help
    - python -m unittest unifrac.tests.test_methods
    - python -m unittest unifrac.tests.test_api
  imports:
    - unifrac
about:
  description: 'UniFrac is a commonly phylogenetic diversity distance metric used
    in

    microbiome research. The metric relates two microbiome samples together

    within the context of an evolutionary history, and produces a distance

    that corresponds to how similar two samples by the amount of overlapping

    branch length.

    '
  dev_url: https://github.com/biocore/unifrac
  doc_url: https://github.com/biocore/unifrac
  home: https://github.com/biocore/unifrac
  license: BSD-3-Clause
  license_family: BSD
  license_file: LICENSE
  summary: Fast phylogenetic diversity calculations
extra:
  copy_test_source_files: true
  final: true
  recipe-maintainers:
    - sfiligoi
    - wasade
