# This file created by conda-build 3.21.4
# meta.yaml template originally from:
# /opt/recipe, last modified Fri Mar 26 14:36:25 2021
# ------------------------------------------------

package:
  name: spades
  version: 3.15.2
source:
  patches:
    - 0001-change-verbosity.patch
  sha256: e93b43951a814dc7bd6a246e1e863bbad6aac4bfe1928569402c131b2af99d0d
  url: https://github.com/ablab/spades/releases/download/v3.15.2/SPAdes-3.15.2.tar.gz
build:
  number: '1'
  string: h95f258a_1
requirements:
  build:
    - _libgcc_mutex 0.1 conda_forge
    - _openmp_mutex 4.5 1_gnu
    - _sysroot_linux-64_curr_repodata_hack 3 ha9d2b57_10
    - binutils_impl_linux-64 2.35.1 h193b22a_2
    - binutils_linux-64 2.35 h67ddf6f_30
    - bzip2 1.0.8 h7f98852_4
    - c-ares 1.17.1 h7f98852_1
    - ca-certificates 2020.12.5 ha878542_0
    - cmake 3.19.6 h3020d66_0
    - expat 2.2.10 h9c3ff4c_0
    - gcc_impl_linux-64 9.3.0 h70c0ae5_18
    - gcc_linux-64 9.3.0 hf25ea35_30
    - gxx_impl_linux-64 9.3.0 hd87eabc_18
    - gxx_linux-64 9.3.0 h3fbe746_30
    - kernel-headers_linux-64 3.10.0 h77966d4_10
    - krb5 1.17.2 h926e7f8_0
    - ld_impl_linux-64 2.35.1 hea4e1c9_2
    - libcurl 7.75.0 hc4aaa36_0
    - libedit 3.1.20191231 he28a2e2_2
    - libev 4.33 h516909a_1
    - libgcc-devel_linux-64 9.3.0 h7864c58_18
    - libgcc-ng 9.3.0 h2828fa1_18
    - libgomp 9.3.0 h2828fa1_18
    - libnghttp2 1.43.0 h812cca2_0
    - libssh2 1.9.0 ha56f1ee_6
    - libstdcxx-devel_linux-64 9.3.0 hb016644_18
    - libstdcxx-ng 9.3.0 h6de172a_18
    - libuv 1.41.0 h7f98852_0
    - llvm-openmp 8.0.1 hc9558a2_0
    - lz4-c 1.9.3 h9c3ff4c_0
    - make 4.3 hd18ef5c_1
    - ncurses 6.2 h58526e2_4
    - openmp 8.0.1 0
    - openssl 1.1.1k h7f98852_0
    - pkg-config 0.29.2 h36c2ea0_1008
    - rhash 1.4.1 h7f98852_0
    - sysroot_linux-64 2.17 h77966d4_10
    - tk 8.6.10 h21135ba_1
    - xz 5.2.5 h516909a_1
    - zlib 1.2.11 h516909a_1010
    - zstd 1.4.9 ha95c52a_0
  host:
    - _libgcc_mutex 0.1 conda_forge
    - _openmp_mutex 4.5 1_gnu
    - _sysroot_linux-64_curr_repodata_hack 3 ha9d2b57_10
    - bzip2 1.0.8 h7f98852_4
    - kernel-headers_linux-64 3.10.0 h77966d4_10
    - libgcc-ng 9.3.0 h2828fa1_18
    - libgomp 9.3.0 h2828fa1_18
    - libstdcxx-ng 9.3.0 h6de172a_18
    - llvm-openmp 8.0.1 hc9558a2_0
    - openmp 8.0.1 0
    - sysroot_linux-64 2.17 h77966d4_10
    - zlib 1.2.11 h516909a_1010
  run:
    - bzip2 >=1.0.8,<2.0a0
    - libgcc-ng >=9.3.0
    - libstdcxx-ng >=9.3.0
    - openmp
    - python
    - sysroot_linux-64=2.17
    - zlib >=1.2.11,<1.3.0a0
test:
  commands:
    - spades.py --version 2>&1 | grep 3.15.2
    - rnaspades.py --version 2>&1 | grep 3.15.2
    - truspades.py --help 2>&1 | grep 3.15.2
    - metaspades.py --version 2>&1 | grep 3.15.2
    - plasmidspades.py --version 2>&1 | grep 3.15.2
    - spades-kmercount -h 2>&1 | grep spades-kmercount
    - spades-gmapper 2>&1 | grep spades-gmapper
    - spades-gbuilder 2>&1 | grep spades-gbuilder
    - spades.py --test && rm -rf spades_test
about:
  description: 'SPAdes (St. Petersburg genome assembler) is a genome assembly algorithm
    which was designed for

    single cell and multi-cells bacterial data sets. However, it might not be suitable
    for large

    genomes projects.


    SPAdes works with Ion Torrent, PacBio, Oxford Nanopore, and Illumina paired-end,
    mate-pairs and

    single reads

    '
  dev_url: https://github.com/ablab/spades
  doc_url: http://cab.spbu.ru/files/release3.15.2/manual.html
  home: http://cab.spbu.ru/software/spades/
  license: GPLv2
  license_family: GPL
  license_file: LICENSE
  summary: SPAdes (St. Petersburg genome assembler) is intended for both standard
    isolates and single-cell MDA bacteria assemblies.
extra:
  copy_test_source_files: true
  final: true
  identifiers:
    - biotools:spades
    - doi:10.1089/cmb.2012.0021
    - doi:10.1093/bioinformatics/btz349
    - doi:10.1093/gigascience/giz100
    - doi:10.1101/gr.213959.116
    - usegalaxy-eu:spades
  recipe-maintainers:
    - druvus
    - notestaff
  skip-lints:
    - should_not_be_noarch_source
