# This file created by conda-build 3.19.2
# meta.yaml template originally from:
# /opt/recipe, last modified Mon Aug 31 08:19:26 2020
# ------------------------------------------------

package:
    name: sepp
    version: 4.3.10
source:
    -   patches:
            - nodeps.setup.py.patch
            - relocate.run-sepp.sh.patch
            - relocate.sepp.config.patch
        sha256: 24d8d410138563017e6f2f1263d5e34427f5bbddb875b72a036f7c879cef203b
        url: https://github.com/smirarab/sepp/archive/4.3.10.tar.gz
build:
    number: '2'
    string: py38h3252c3a_2
requirements:
    host:
        - _libgcc_mutex 0.1 conda_forge
        - _openmp_mutex 4.5 1_gnu
        - alsa-lib 1.2.3 h516909a_0
        - ca-certificates 2020.6.20 hecda079_0
        - cairo 1.16.0 h3fc0475_1005
        - certifi 2020.6.20 py38h32f6830_0
        - dendropy 4.4.0 pyh864c0ab_2
        - fontconfig 2.13.1 h1056068_1002
        - freetype 2.10.2 he06d7ca_0
        - gettext 0.19.8.1 hc5be6a0_1002
        - giflib 5.2.1 h516909a_2
        - glib 2.65.0 h6f030ca_0
        - graphite2 1.3.13 he1b5a44_1001
        - harfbuzz 2.7.2 hee91db6_0
        - hmmer 3.1b2 3
        - icu 67.1 he1b5a44_0
        - jpeg 9d h516909a_0
        - lcms2 2.11 hbd6801e_0
        - ld_impl_linux-64 2.34 hc38a660_9
        - libffi 3.2.1 he1b5a44_1007
        - libgcc-ng 9.3.0 h24d8f2e_16
        - libgomp 9.3.0 h24d8f2e_16
        - libiconv 1.16 h516909a_0
        - libpng 1.6.37 hed695b0_2
        - libstdcxx-ng 9.3.0 hdf63c60_16
        - libtiff 4.1.0 hc7e4089_6
        - libuuid 2.32.1 h14c3975_1000
        - libwebp-base 1.1.0 h516909a_3
        - libxcb 1.13 h14c3975_1002
        - libxml2 2.9.10 h68273f3_2
        - lz4-c 1.9.2 he1b5a44_3
        - ncurses 6.2 he1b5a44_1
        - openjdk 11.0.8 hacce0ff_0
        - openssl 1.1.1g h516909a_1
        - pcre 8.44 he1b5a44_0
        - pip 20.2.2 py_0
        - pixman 0.38.0 h516909a_1003
        - pthread-stubs 0.4 h14c3975_1001
        - python 3.8.5 h1103e12_7_cpython
        - python_abi 3.8 1_cp38
        - readline 8.0 he28a2e2_2
        - setuptools 50.0.0 py38h32f6830_0
        - sqlite 3.33.0 h4cf870e_0
        - tk 8.6.10 hed695b0_0
        - wheel 0.35.1 pyh9f0ad1d_0
        - xorg-fixesproto 5.0 h14c3975_1002
        - xorg-inputproto 2.3.2 h14c3975_1002
        - xorg-kbproto 1.0.7 h14c3975_1002
        - xorg-libice 1.0.10 h516909a_0
        - xorg-libsm 1.2.3 h84519dc_1000
        - xorg-libx11 1.6.12 h516909a_0
        - xorg-libxau 1.0.9 h14c3975_0
        - xorg-libxdmcp 1.1.3 h516909a_0
        - xorg-libxext 1.3.4 h516909a_0
        - xorg-libxfixes 5.0.3 h516909a_1004
        - xorg-libxi 1.7.10 h516909a_0
        - xorg-libxrender 0.9.10 h516909a_1002
        - xorg-libxtst 1.2.3 h516909a_1002
        - xorg-recordproto 1.14.2 h516909a_1002
        - xorg-renderproto 0.11.1 h14c3975_1002
        - xorg-xextproto 7.3.0 h14c3975_1002
        - xorg-xproto 7.0.31 h14c3975_1007
        - xz 5.2.5 h516909a_1
        - zlib 1.2.11 h516909a_1009
        - zstd 1.4.5 h6597ccf_2
    run:
        - dendropy
        - hmmer ==3.1b2
        - openjdk
        - python >=3.8,<3.9.0a0
        - python_abi 3.8.* *_cp38
test:
    commands:
        - run_sepp.py --help
        - run-sepp.sh $PREFIX/share/sepp/ref/input_fragments.fasta testrun_tiny -a
            $PREFIX/share/sepp/ref/reference_alignment_tiny.fasta -t $PREFIX/share/sepp/ref/reference_phylogeny_tiny.nwk
            -r $PREFIX/share/sepp/ref/RAxML_info-reference-gg-raxml-bl.info -x 1 -b
            1
        - grep "f__Halomonadaceae" testrun_tiny_placement.tog.relabelled.tre
        - grep "testseqd" testrun_tiny_placement.tog.relabelled.tre
about:
    home: https://github.com/smirarab/sepp
    license: GPLv3
    license_family: GPL3
    license_file: LICENSE
    summary: SATe-enabled phylogenetic placement
extra:
    copy_test_source_files: true
    final: true
    identifiers:
        - biotools:sepp
    skip-lints:
        - should_be_noarch_generic
