# This file created by conda-build 24.7.1
# meta.yaml template originally from:
# /opt/recipe, last modified Mon Jul 14 21:17:32 2025
# ------------------------------------------------

package:
  name: samtools
  version: 1.22.1
source:
  sha256: 02aa5cd0ba52e06c2080054e059d7d77a885dfe9717c31cd89dfe7a4047eda0e
  url: https://github.com/samtools/samtools/releases/download/1.22.1/samtools-1.22.1.tar.bz2
build:
  number: '0'
  run_exports:
    - samtools >=1.22.1,<2.0a0
  string: h96c455f_0
requirements:
  build:
    - _libgcc_mutex 0.1 conda_forge
    - _openmp_mutex 4.5 2_gnu
    - binutils_impl_linux-64 2.44 h4bf12b8_1
    - binutils_linux-64 2.44 h4852527_1
    - gcc_impl_linux-64 13.3.0 h1e990d8_2
    - gcc_linux-64 13.3.0 h6f18a23_11
    - kernel-headers_linux-64 3.10.0 he073ed8_18
    - ld_impl_linux-64 2.44 h1423503_1
    - libgcc 15.1.0 h767d61c_3
    - libgcc-devel_linux-64 13.3.0 hc03c837_102
    - libgomp 15.1.0 h767d61c_3
    - libsanitizer 13.3.0 he8ea267_2
    - libstdcxx 15.1.0 h8f9b012_3
    - make 4.4.1 hb9d3cd8_2
    - sysroot_linux-64 2.17 h0157908_18
    - tzdata 2025b h78e105d_0
  host:
    - _libgcc_mutex 0.1 conda_forge
    - _openmp_mutex 4.5 2_gnu
    - bzip2 1.0.8 h4bc722e_7
    - c-ares 1.34.5 hb9d3cd8_0
    - ca-certificates 2025.7.14 hbd8a1cb_0
    - htslib 1.22.1 h566b1c6_0
    - keyutils 1.6.1 h166bdaf_0
    - krb5 1.21.3 h659f571_0
    - libcurl 8.14.1 h332b0f4_0
    - libdeflate 1.22 hb9d3cd8_0
    - libedit 3.1.20250104 pl5321h7949ede_0
    - libev 4.33 hd590300_2
    - libgcc 15.1.0 h767d61c_3
    - libgcc-ng 15.1.0 h69a702a_3
    - libgomp 15.1.0 h767d61c_3
    - liblzma 5.8.1 hb9d3cd8_2
    - libnghttp2 1.64.0 h161d5f1_0
    - libssh2 1.11.1 hcf80075_0
    - libstdcxx 15.1.0 h8f9b012_3
    - libstdcxx-ng 15.1.0 h4852527_3
    - libzlib 1.3.1 hb9d3cd8_2
    - ncurses 6.5 h2d0b736_3
    - openssl 3.5.1 h7b32b05_0
    - zlib 1.3.1 hb9d3cd8_2
    - zstd 1.5.7 hb8e6e7a_2
  run:
    - htslib >=1.22.1,<1.23.0a0
    - libgcc >=13
    - libzlib >=1.3.1,<2.0a0
    - ncurses >=6.5,<7.0a0
test:
  commands:
    - samtools --help
    - samtools view 'https://example.com' 2>&1 | grep 'fail to read the header' -q
about:
  home: https://github.com/samtools/samtools
  license: MIT
  license_file: LICENSE
  summary: Tools for dealing with SAM, BAM and CRAM files
extra:
  additional-platforms:
    - linux-aarch64
    - osx-arm64
  copy_test_source_files: true
  final: true
  identifiers:
    - biotools:samtools
    - usegalaxy-eu:samtools_flagstat
