# This file created by conda-build 3.21.8
# meta.yaml template originally from:
# /opt/recipe, last modified Mon Oct 10 19:40:21 2022
# ------------------------------------------------

package:
  name: samtools
  version: 1.16.1
source:
  sha256: 2fa0a25f78594cf23d07c9d32d5060a14f1c5ee14d7b0af7a8a71abc9fdf1d07
  url: https://github.com/samtools/samtools/releases/download/1.16.1/samtools-1.16.1.tar.bz2
build:
  number: '1'
  string: h6899075_1
requirements:
  build:
    - _libgcc_mutex 0.1 conda_forge
    - _openmp_mutex 4.5 2_gnu
    - binutils_impl_linux-64 2.36.1 h193b22a_2
    - binutils_linux-64 2.36 hf3e587d_10
    - gcc_impl_linux-64 10.4.0 h7ee1905_16
    - gcc_linux-64 10.4.0 h9215b83_10
    - kernel-headers_linux-64 2.6.32 he073ed8_15
    - ld_impl_linux-64 2.36.1 hea4e1c9_2
    - libgcc-devel_linux-64 10.4.0 h74af60c_16
    - libgcc-ng 12.1.0 h8d9b700_16
    - libgomp 12.1.0 h8d9b700_16
    - libsanitizer 10.4.0 hde28e3b_16
    - libstdcxx-ng 12.1.0 ha89aaad_16
    - make 4.3 hd18ef5c_1
    - sysroot_linux-64 2.12 he073ed8_15
  host:
    - _libgcc_mutex 0.1 conda_forge
    - _openmp_mutex 4.5 2_gnu
    - bzip2 1.0.8 h7f98852_4
    - c-ares 1.18.1 h7f98852_0
    - ca-certificates 2022.9.24 ha878542_0
    - htslib 1.16 h6bc39ce_0
    - keyutils 1.6.1 h166bdaf_0
    - krb5 1.19.3 h3790be6_0
    - libcurl 7.85.0 h7bff187_0
    - libdeflate 1.13 h166bdaf_0
    - libedit 3.1.20191231 he28a2e2_2
    - libev 4.33 h516909a_1
    - libgcc-ng 12.1.0 h8d9b700_16
    - libgomp 12.1.0 h8d9b700_16
    - libnghttp2 1.47.0 hdcd2b5c_1
    - libssh2 1.10.0 haa6b8db_3
    - libstdcxx-ng 12.1.0 ha89aaad_16
    - libzlib 1.2.12 h166bdaf_4
    - ncurses 6.3 h27087fc_1
    - openssl 1.1.1q h166bdaf_0
    - xz 5.2.6 h166bdaf_0
    - zlib 1.2.12 h166bdaf_4
  run:
    - htslib >=1.16,<1.17.0a0
    - htslib >=1.16,<1.17.0a0
    - libgcc-ng >=12
    - libzlib >=1.2.12,<1.3.0a0
    - ncurses >=6.3,<7.0a0
    - zlib >=1.2.12,<1.3.0a0
test:
  commands:
    - samtools --help
    - samtools view 'https://example.com' 2>&1 | grep 'fail to read the header' -q
about:
  home: https://github.com/samtools/samtools
  license: MIT
  license_file: LICENSE
  summary: Tools for dealing with SAM, BAM and CRAM files
extra:
  copy_test_source_files: true
  final: true
  identifiers:
    - biotools:samtools
    - usegalaxy-eu:samtools_flagstat
