{% set name = "repeatmasker" %}
{% set version = "4.1.5" %}
{% set sha256 = "16e07f9efd99adf15f4492b0e334df5ad4ea6ca38ddf62bdd180d257f2f4753f" %}

package:
  name: {{ name }}
  version: {{ version }}

source:
  url: https://www.repeatmasker.org/RepeatMasker/RepeatMasker-{{ version }}.tar.gz
  sha256: {{ sha256 }}

build:
  number: 1
  noarch: generic
  run_exports:
    - {{ pin_subpackage('repeatmasker', max_pin='x.x.x') }}

requirements:
  host:
    - perl
    - rmblast
    - h5py
  run:
    - rmblast
    - hmmer
    - trf
    - perl
    - h5py
    - wget

test:
# pvanheus - disable file based tests for
# now - they don't work with Dockerized
# containers - 13/1/2017
#  files:
#  - rm_input1.fasta
#  - sample_repeats.fasta
#  - test_md5.txt
  commands:
  - RepeatMasker | grep "RepeatMasker - Mask repetitive DNA" > /dev/null

about:
  home: https://www.repeatmasker.org
  license: Open Software License v2.1
  summary: RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.

extra:
  identifiers:
    - biotools:RepeatMasker