Barro Colorado Island Tree Counts
Canonical Correlation Analysis
Rotate First MDS Dimension Parallel to an External Variable
Mitchell-Olds and Shaw Test for the Location of Quadratic Extreme
Adjusted R-square
Self-Starting nls Species-Area Models
Add or Drop Single Terms to a Constrained Ordination Model
Additive Diversity Partitioning and Hierarchical Null Model Testing
Permutational Multivariate Analysis of Variance Using Distance Matrices
Analysis of Similarities
Permutation Test for Constrained Correspondence Analysis, Redundancy Analysis and Constrained Analysis of Principal Coordinates
Averaged Subsampled Dissimilarity Matrices
Beals Smoothing and Degree of Absence
Multivariate homogeneity of groups dispersions (variances)
Indices of beta Diversity
Coefficients of Biogeographical Dispersal Direction
Best Subset of Environmental Variables with Maximum (Rank) Correlation with Community Dissimilarities
PCA biplot
[Partial] Distance-based Redundancy Analysis
K-means partitioning using a range of values of K
[Partial] [Constrained] Correspondence Analysis and Redundancy Analysis
Result Object from Constrained Ordination
Multinomial Species Classification Method (CLAM)
Create an Object for Null Model Algorithms
Contribution Diversity Approach
Detrended Correspondence Analysis and Basic Reciprocal Averaging
Standardization Methods for Community Ecology
Design your own Dissimilarities
Statistics Resembling Deviance and AIC for Constrained Ordination
Morisita index of intraspecific aggregation
Dispersion-based weighting of species counts
Connectedness of Dissimilarities
Ecological Diversity Indices
Vegetation and Environment in Dutch Dune Meadows.
Taxonomic Classification and Phylogeny of Dune Meadow Species
Extract Eigenvalues from an Ordination Object
Fits an Environmental Vector or Factor onto an Ordination
Scale Parameter at the Minimum of the Tsallis Evenness Profile
Fit Fisher's Logseries and Preston's Lognormal Model to Abundance Data
Diagnostic Tools for [Constrained] Ordination (CCA, RDA, DCA, CA, PCA)
Goodness of Fit and Shepard Plot for Nonmetric Multidimensional Scaling
Indicator Power of Species
Linear Model Diagnostics for Constrained Ordination
Isometric Feature Mapping Ordination
Kendall coefficient of concordance
Plots One-dimensional Diagrams without Overwriting Labels
Abbreviates a Botanical or Zoological Latin Name into an Eight-character Name
Mantel and Partial Mantel Tests for Dissimilarity Matrices
Mantel Correlogram
Nonmetric Multidimensional Scaling with Stable Solution from Random Starts, Axis Scaling and Species Scores
Oribatid Mite Data with Explanatory Variables
Global and Local Non-metric Multidimensional Scaling and Linear and Hybrid Scaling
Multi Response Permutation Procedure and Mean Dissimilarity Matrix
Functions for performing and displaying a spatial partitioning of cca or rda results
Multiplicative Diversity Partitioning
Nestedness Indices for Communities of Islands or Patches
Extract the Number of Observations from a vegan Fit.
Null Model and Simulation
Evaluate Statistics with Null Models of Biological Communities
Support Functions for Drawing Vectors
Add Arrows and Line Segments to Ordination Diagrams
Display Groups or Factor Levels in Ordination Diagrams
Add Text on Non-transparent Label to an Ordination Plot.
Alternative plot and identify Functions for Ordination
Ordination Plots with Points and Optimized Locations for Text
Plots of Residuals and Fitted Values for Constrained Ordination
Choose a Model by Permutation Tests in Constrained Ordination
Fit and Plot Smooth Surfaces of Variables on Ordination.
Ordination Plot with Movable Labels
Add Text or Points to Ordination Plots
Trellis (Lattice) Plots for Ordination
Principal Coordinates of Neighbourhood Matrix
Matrix Permutation Algorithms for Presence-Absence and Count Data
Extract, Analyse and Display Permutation Results
Permutation tests in Vegan
Permutation test of multivariate homogeneity of groups dispersions (variances)
Plot or Extract Results of Constrained Correspondence Analysis or Redundancy Analysis
Principal Response Curves for Treatments with Repeated Observations
Prediction Tools for [Constrained] Ordination (CCA, RDA, DCA, CA, PCA)
Procrustes Rotation of Two Configurations and PROTEST
Response of Aquatic Invertebrates to Insecticide Treatment
Rank - Abundance or Dominance / Diversity Models
Compares Dissimilarity Indices for Gradient Detection
Rarefaction Species Richness
Raup-Crick Dissimilarity with Unequal Sampling Densities of Species
Reads a CEP (Canoco) data file
Renyi and Hill Diversities and Corresponding Accumulation Curves
Reorder a Hierarchical Clustering Tree
Get Species or Site Scores from an Ordination
Screeplots for Ordination Results and Broken Stick Distributions
Similarity Percentages
Simulate Responses with Gaussian Error or Permuted Residuals for Constrained Ordination
Birds in the Archipelago of Sipoo (Sibbo and Borgå)
Minimum Spanning Tree
Species Accumulation Curves
Extrapolated Species Richness in a Species Pool
Add or Replace Species Scores in Distance-Based Ordination
Stepacross as Flexible Shortest Paths or Extended Dissimilarities
Display Ordination Distances Against Observed Distances in Eigenvector Ordinations
Indices of Taxonomic Diversity and Distinctness
Species tolerances and sample heterogeneities
Functional Diversity and Community Distances from Species Trees
Tsallis Diversity and Corresponding Accumulation Curves
Vegetation and environment in lichen pastures
Partition the Variation of Community Matrix by 2, 3, or 4 Explanatory Matrices
Defunct Functions in Package 'vegan'
Deprecated Functions in vegan package
Internal vegan functions
Community Ecology Package: Ordination, Diversity and Dissimilarities
Dissimilarity Indices for Community Ecologists
Display Compact Ordered Community Tables
Weighted Averages Scores for Species
Weighted Classical (Metric) Multidimensional Scaling