LICENSE
MANIFEST.in
README.md
setup.cfg
setup.py
versioneer.py
q2_quality_control/__init__.py
q2_quality_control/_blast.py
q2_quality_control/_evaluate_seqs.py
q2_quality_control/_evaluate_taxonomy.py
q2_quality_control/_filter.py
q2_quality_control/_pipelines.py
q2_quality_control/_stats.py
q2_quality_control/_transformer.py
q2_quality_control/_utilities.py
q2_quality_control/_version.py
q2_quality_control/citations.bib
q2_quality_control/decontam.py
q2_quality_control/plugin_setup.py
q2_quality_control/quality_control.py
q2_quality_control.egg-info/PKG-INFO
q2_quality_control.egg-info/SOURCES.txt
q2_quality_control.egg-info/dependency_links.txt
q2_quality_control.egg-info/entry_points.txt
q2_quality_control.egg-info/not-zip-safe
q2_quality_control.egg-info/top_level.txt
q2_quality_control/_threshold_graph/__init__.py
q2_quality_control/_threshold_graph/_visualizer.py
q2_quality_control/_threshold_graph/assets/index.html
q2_quality_control/assets/index.html
q2_quality_control/decontam_assets/run_decontam.R
q2_quality_control/tests/__init__.py
q2_quality_control/tests/test_decontam.py
q2_quality_control/tests/test_filter.py
q2_quality_control/tests/test_quality_control.py
q2_quality_control/tests/test_stats.py
q2_quality_control/tests/data/bacterial-query-sequences.fasta
q2_quality_control/tests/data/bacterial-ref-sequences.fasta
q2_quality_control/tests/data/exp-results.tsv
q2_quality_control/tests/data/fungal-query-sequences.fasta
q2_quality_control/tests/data/fungal-ref-sequences.fasta
q2_quality_control/tests/data/mock-3-expected-taxonomy.tsv
q2_quality_control/tests/data/mock-3-obs-table.biom
q2_quality_control/tests/data/mock-3-observed-taxonomy.tsv
q2_quality_control/tests/data/mock-3-results.tsv
q2_quality_control/tests/data/paired-end.qza
q2_quality_control/tests/data/qc-mock-3-expected.qza
q2_quality_control/tests/data/qc-mock-3-observed.qza
q2_quality_control/tests/data/query-partially-random.fasta
q2_quality_control/tests/data/query-sequences-left-justified.fasta
q2_quality_control/tests/data/query-sequences-short.fasta
q2_quality_control/tests/data/query-sequences-with-mismatch.fasta
q2_quality_control/tests/data/query-sequences.fasta
q2_quality_control/tests/data/sars2-genome.qza
q2_quality_control/tests/data/sars2-indexed.qza
q2_quality_control/tests/data/single-end.qza
q2_quality_control/tests/data/test_evaluate_seqs_identical.tsv
q2_quality_control/tests/data/test_evaluate_seqs_mismatches.tsv
q2_quality_control/tests/data/test_evaluate_seqs_part_rand.tsv
q2_quality_control/tests/data/expected/combined-score-table.tsv
q2_quality_control/tests/data/expected/decon_default_ASV_table.qza
q2_quality_control/tests/data/expected/decon_default_score_table.qza
q2_quality_control/tests/data/expected/frequency-score-table.tsv
q2_quality_control/tests/data/expected/no-contaminant-asv-table.tsv
q2_quality_control/tests/data/expected/prevalence-score-table.tsv
q2_quality_control/tests/data/expected/score-table-format.tsv
q2_quality_control/tests/data/expected/test_metadata.tsv
q2_quality_control/tests/data/expected/test_metadata_different_ordered_names.tsv
q2_quality_control/tests/data/expected/test_metadata_more_sample_names.tsv