LICENSE
MANIFEST.in
README.md
setup.cfg
setup.py
versioneer.py
q2_moshpit/__init__.py
q2_moshpit/_utils.py
q2_moshpit/_version.py
q2_moshpit/citations.bib
q2_moshpit/plugin_setup.py
q2_moshpit.egg-info/PKG-INFO
q2_moshpit.egg-info/SOURCES.txt
q2_moshpit.egg-info/dependency_links.txt
q2_moshpit.egg-info/entry_points.txt
q2_moshpit.egg-info/not-zip-safe
q2_moshpit.egg-info/top_level.txt
q2_moshpit/dereplication/__init__.py
q2_moshpit/dereplication/derep.py
q2_moshpit/dereplication/tests/__init__.py
q2_moshpit/dereplication/tests/test_dereplication.py
q2_moshpit/dereplication/tests/data/distance-matrix.tsv
q2_moshpit/dereplication/tests/data/pa-table.csv
q2_moshpit/dereplication/tests/data/mags/MANIFEST
q2_moshpit/dereplication/tests/data/mags-unique/24dee6fe-9b84-45bb-8145-de7b092533a1.fasta
q2_moshpit/dereplication/tests/data/mags-unique/ca7012fc-ba65-40c3-84f5-05aa478a7585.fasta
q2_moshpit/dereplication/tests/data/mags-unique/d65a71fa-4279-4588-b937-0747ed5d604d.fasta
q2_moshpit/dereplication/tests/data/mags/sample1/24dee6fe-9b84-45bb-8145-de7b092533a1.fasta
q2_moshpit/dereplication/tests/data/mags/sample1/ca7012fc-ba65-40c3-84f5-05aa478a7585.fasta
q2_moshpit/dereplication/tests/data/mags/sample1/fb0bc871-04f6-486b-a10e-8e0cb66f8de3.fasta
q2_moshpit/dereplication/tests/data/mags/sample2/d65a71fa-4279-4588-b937-0747ed5d604d.fasta
q2_moshpit/dereplication/tests/data/mags/sample2/db03f8b6-28e1-48c5-a47c-9c65f38f7357.fasta
q2_moshpit/dereplication/tests/data/mags/sample2/fa4d7420-d0a4-455a-b4d7-4fa66e54c9bf.fasta
q2_moshpit/eggnog/__init__.py
q2_moshpit/eggnog/_method.py
q2_moshpit/eggnog/tests/__init__.py
q2_moshpit/eggnog/tests/test_method.py
q2_moshpit/eggnog/tests/data/README.md
q2_moshpit/eggnog/tests/data/random-db-1.fa
q2_moshpit/eggnog/tests/data/contig-sequences-1/s1_contigs.fa
q2_moshpit/eggnog/tests/data/contig-sequences-1/s2_contigs.fa
q2_moshpit/eggnog/tests/data/eggnog_db/eggnog.db
q2_moshpit/eggnog/tests/data/eggnog_db/eggnog.taxa.db
q2_moshpit/eggnog/tests/data/eggnog_db/eggnog.taxa.db.traverse.pkl
q2_moshpit/eggnog/tests/data/expected/test_output.emapper.annotations
q2_moshpit/eggnog/tests/data/good_hits/test_tiny.emappper.seed_orthologs
q2_moshpit/eggnog/tests/data/mag-sequences/194b1aca-9373-4298-ba5c-05b382d1f553.fa
q2_moshpit/eggnog/tests/data/mag-sequences/e1ba1d20-b466-4fef-ae19-6bf9c5c63d6f.fa
q2_moshpit/eggnog/tests/data/random-db-1/ref_db.dmnd
q2_moshpit/kraken2/__init__.py
q2_moshpit/kraken2/bracken.py
q2_moshpit/kraken2/classification.py
q2_moshpit/kraken2/database.py
q2_moshpit/kraken2/select.py
q2_moshpit/kraken2/utils.py
q2_moshpit/kraken2/tests/__init__.py
q2_moshpit/kraken2/tests/test_bracken.py
q2_moshpit/kraken2/tests/test_classification.py
q2_moshpit/kraken2/tests/test_database.py
q2_moshpit/kraken2/tests/test_selection.py
q2_moshpit/kraken2/tests/test_utils.py
q2_moshpit/kraken2/tests/data/mag-taxa-1.csv
q2_moshpit/kraken2/tests/data/mag-taxa-2.csv
q2_moshpit/kraken2/tests/data/mag-taxa-3.csv
q2_moshpit/kraken2/tests/data/mag-taxa-4.csv
q2_moshpit/kraken2/tests/data/bracken-db/database100mers.kmer_distrib
q2_moshpit/kraken2/tests/data/bracken-db/database150mers.kmer_distrib
q2_moshpit/kraken2/tests/data/bracken-report/sample1.bracken.output.txt
q2_moshpit/kraken2/tests/data/bracken-report/sample1.table.csv
q2_moshpit/kraken2/tests/data/bracken-report/sample2.table.csv
q2_moshpit/kraken2/tests/data/bracken-report/samples-merged.csv
q2_moshpit/kraken2/tests/data/bracken-report/sample1/bracken.report.txt
q2_moshpit/kraken2/tests/data/contigs/samples/ba_contigs.fasta
q2_moshpit/kraken2/tests/data/contigs/samples/mm_contigs.fasta
q2_moshpit/kraken2/tests/data/contigs/samples/sa_contigs.fasta
q2_moshpit/kraken2/tests/data/contigs/samples/se_contigs.fasta
q2_moshpit/kraken2/tests/data/contigs/small-kraken2-db/hash.k2d
q2_moshpit/kraken2/tests/data/contigs/small-kraken2-db/opts.k2d
q2_moshpit/kraken2/tests/data/contigs/small-kraken2-db/taxo.k2d
q2_moshpit/kraken2/tests/data/db/hash.k2d
q2_moshpit/kraken2/tests/data/db/opts.k2d
q2_moshpit/kraken2/tests/data/db/taxo.k2d
q2_moshpit/kraken2/tests/data/kraken2-reports-select/kraken2_reads_table.json
q2_moshpit/kraken2/tests/data/kraken2-reports-select/kraken2_reads_table_filtered.json
q2_moshpit/kraken2/tests/data/kraken2-reports-select/kraken2_taxonomy.tsv
q2_moshpit/kraken2/tests/data/kraken2-reports-select/kraken2_taxonomy_filtered.tsv
q2_moshpit/kraken2/tests/data/kraken2-reports-select/samples/sample1.report.txt
q2_moshpit/kraken2/tests/data/kraken2-reports-select/samples/sample2.report.txt
q2_moshpit/kraken2/tests/data/kraken2-to-ncbi-tree/exp-tree1.txt
q2_moshpit/kraken2/tests/data/kraken2-to-ncbi-tree/example1/sample1/sample1.report.txt
q2_moshpit/kraken2/tests/data/mags-derep/3b72d1a7-ddb0-4dc7-ac36-080ceda04aaa.fasta
q2_moshpit/kraken2/tests/data/mags-derep/8894435a-c836-4c18-b475-8b38a9ab6c6b.fasta
q2_moshpit/kraken2/tests/data/outputs-mags/3b72d1a7-ddb0-4dc7-ac36-080ceda04aaa.output.txt
q2_moshpit/kraken2/tests/data/outputs-mags/8894435a-c836-4c18-b475-8b38a9ab6c6b.output.txt
q2_moshpit/kraken2/tests/data/paired-end/MANIFEST
q2_moshpit/kraken2/tests/data/paired-end/reads1_R1.fastq.gz
q2_moshpit/kraken2/tests/data/paired-end/reads1_R2.fastq.gz
q2_moshpit/kraken2/tests/data/paired-end/reads2_R1.fastq.gz
q2_moshpit/kraken2/tests/data/paired-end/reads2_R2.fastq.gz
q2_moshpit/kraken2/tests/data/reports-mags/3b72d1a7-ddb0-4dc7-ac36-080ceda04aaa.report.txt
q2_moshpit/kraken2/tests/data/reports-mags/8894435a-c836-4c18-b475-8b38a9ab6c6b.report.txt
q2_moshpit/kraken2/tests/data/seqs/dna-sequences.fasta
q2_moshpit/kraken2/tests/data/single-end/MANIFEST
q2_moshpit/kraken2/tests/data/single-end/reads1_R1.fastq.gz
q2_moshpit/kraken2/tests/data/single-end/reads2_R1.fastq.gz
q2_moshpit/metabat2/__init__.py
q2_moshpit/metabat2/metabat2.py
q2_moshpit/metabat2/utils.py
q2_moshpit/metabat2/tests/__init__.py
q2_moshpit/metabat2/tests/test_metabat2.py
q2_moshpit/metabat2/tests/test_utils.py
q2_moshpit/metabat2/tests/data/bins-no-uuid/samp1/bin.1.fa
q2_moshpit/metabat2/tests/data/bins-no-uuid/samp1/bin.2.fa
q2_moshpit/metabat2/tests/data/bins-no-uuid/samp2/bin.1.fa
q2_moshpit/metabat2/tests/data/bins-no-uuid/samp2/bin.2.fa
q2_moshpit/metabat2/tests/data/bins-small/samp1/522775d4-b1c6-4ee3-8b47-cd990f17eb8b.fa
q2_moshpit/metabat2/tests/data/bins-small/samp1/684db670-6304-4f33-a0ea-7f570532e178.fa
q2_moshpit/metabat2/tests/data/bins-small/samp2/37356c23-b8db-4bbe-b4c9-d35e1cef615b.fa
q2_moshpit/metabat2/tests/data/bins-small/samp2/51c19113-31f0-4e4c-bbb3-b9df26b949f3.fa
q2_moshpit/metabat2/tests/data/bins/samp1/522775d4-b1c6-4ee3-8b47-cd990f17eb8b.fa
q2_moshpit/metabat2/tests/data/bins/samp1/684db670-6304-4f33-a0ea-7f570532e178.fa
q2_moshpit/metabat2/tests/data/bins/samp2/37356c23-b8db-4bbe-b4c9-d35e1cef615b.fa
q2_moshpit/metabat2/tests/data/bins/samp2/51c19113-31f0-4e4c-bbb3-b9df26b949f3.fa
q2_moshpit/metabat2/tests/data/contigs/samp1_contigs.fa
q2_moshpit/metabat2/tests/data/contigs/samp2_contigs.fa
q2_moshpit/metabat2/tests/data/depth/samp1_depth.txt
q2_moshpit/metabat2/tests/data/maps/samp1_alignment.bam
q2_moshpit/metabat2/tests/data/maps/samp2_alignment.bam
q2_moshpit/tests/__init__.py
q2_moshpit/tests/test_utils.py