lib/python3.11/site-packages/pysam-0.22.1-py3.11.egg-info/PKG-INFO lib/python3.11/site-packages/pysam-0.22.1-py3.11.egg-info/SOURCES.txt lib/python3.11/site-packages/pysam-0.22.1-py3.11.egg-info/dependency_links.txt lib/python3.11/site-packages/pysam-0.22.1-py3.11.egg-info/not-zip-safe lib/python3.11/site-packages/pysam-0.22.1-py3.11.egg-info/top_level.txt lib/python3.11/site-packages/pysam/Pileup.py lib/python3.11/site-packages/pysam/__init__.py lib/python3.11/site-packages/pysam/__pycache__/Pileup.cpython-311.pyc lib/python3.11/site-packages/pysam/__pycache__/__init__.cpython-311.pyc lib/python3.11/site-packages/pysam/__pycache__/bcftools.cpython-311.pyc lib/python3.11/site-packages/pysam/__pycache__/config.cpython-311.pyc lib/python3.11/site-packages/pysam/__pycache__/samtools.cpython-311.pyc lib/python3.11/site-packages/pysam/__pycache__/utils.cpython-311.pyc lib/python3.11/site-packages/pysam/__pycache__/version.cpython-311.pyc lib/python3.11/site-packages/pysam/bcftools.py lib/python3.11/site-packages/pysam/cbcftools_util.h lib/python3.11/site-packages/pysam/config.py lib/python3.11/site-packages/pysam/csamtools_util.h lib/python3.11/site-packages/pysam/htslib_util.c lib/python3.11/site-packages/pysam/htslib_util.h lib/python3.11/site-packages/pysam/include/__init__.py lib/python3.11/site-packages/pysam/include/__pycache__/__init__.cpython-311.pyc lib/python3.11/site-packages/pysam/include/bcftools/HMM.c lib/python3.11/site-packages/pysam/include/bcftools/HMM.c.pysam.c lib/python3.11/site-packages/pysam/include/bcftools/HMM.h lib/python3.11/site-packages/pysam/include/bcftools/LICENSE lib/python3.11/site-packages/pysam/include/bcftools/README lib/python3.11/site-packages/pysam/include/bcftools/abuf.c lib/python3.11/site-packages/pysam/include/bcftools/abuf.c.pysam.c lib/python3.11/site-packages/pysam/include/bcftools/abuf.h lib/python3.11/site-packages/pysam/include/bcftools/bam2bcf.c lib/python3.11/site-packages/pysam/include/bcftools/bam2bcf.c.pysam.c lib/python3.11/site-packages/pysam/include/bcftools/bam2bcf.h lib/python3.11/site-packages/pysam/include/bcftools/bam2bcf_iaux.c lib/python3.11/site-packages/pysam/include/bcftools/bam2bcf_iaux.c.pysam.c lib/python3.11/site-packages/pysam/include/bcftools/bam2bcf_indel.c lib/python3.11/site-packages/pysam/include/bcftools/bam2bcf_indel.c.pysam.c lib/python3.11/site-packages/pysam/include/bcftools/bam_sample.c lib/python3.11/site-packages/pysam/include/bcftools/bam_sample.c.pysam.c lib/python3.11/site-packages/pysam/include/bcftools/bam_sample.h lib/python3.11/site-packages/pysam/include/bcftools/bcftools.h lib/python3.11/site-packages/pysam/include/bcftools/bcftools.pysam.c lib/python3.11/site-packages/pysam/include/bcftools/bcftools.pysam.h lib/python3.11/site-packages/pysam/include/bcftools/bin.c lib/python3.11/site-packages/pysam/include/bcftools/bin.c.pysam.c lib/python3.11/site-packages/pysam/include/bcftools/bin.h lib/python3.11/site-packages/pysam/include/bcftools/call.h lib/python3.11/site-packages/pysam/include/bcftools/ccall.c lib/python3.11/site-packages/pysam/include/bcftools/ccall.c.pysam.c lib/python3.11/site-packages/pysam/include/bcftools/cigar_state.h lib/python3.11/site-packages/pysam/include/bcftools/cols.c lib/python3.11/site-packages/pysam/include/bcftools/cols.c.pysam.c lib/python3.11/site-packages/pysam/include/bcftools/cols.h lib/python3.11/site-packages/pysam/include/bcftools/config.h lib/python3.11/site-packages/pysam/include/bcftools/consensus.c lib/python3.11/site-packages/pysam/include/bcftools/consensus.c.pysam.c lib/python3.11/site-packages/pysam/include/bcftools/convert.c lib/python3.11/site-packages/pysam/include/bcftools/convert.c.pysam.c lib/python3.11/site-packages/pysam/include/bcftools/convert.h lib/python3.11/site-packages/pysam/include/bcftools/csq.c lib/python3.11/site-packages/pysam/include/bcftools/csq.c.pysam.c lib/python3.11/site-packages/pysam/include/bcftools/dbuf.h lib/python3.11/site-packages/pysam/include/bcftools/dist.c lib/python3.11/site-packages/pysam/include/bcftools/dist.c.pysam.c lib/python3.11/site-packages/pysam/include/bcftools/dist.h lib/python3.11/site-packages/pysam/include/bcftools/em.c lib/python3.11/site-packages/pysam/include/bcftools/em.c.pysam.c lib/python3.11/site-packages/pysam/include/bcftools/extsort.c lib/python3.11/site-packages/pysam/include/bcftools/extsort.c.pysam.c lib/python3.11/site-packages/pysam/include/bcftools/extsort.h lib/python3.11/site-packages/pysam/include/bcftools/filter.c lib/python3.11/site-packages/pysam/include/bcftools/filter.c.pysam.c lib/python3.11/site-packages/pysam/include/bcftools/filter.h lib/python3.11/site-packages/pysam/include/bcftools/gff.c lib/python3.11/site-packages/pysam/include/bcftools/gff.c.pysam.c lib/python3.11/site-packages/pysam/include/bcftools/gff.h lib/python3.11/site-packages/pysam/include/bcftools/gvcf.c lib/python3.11/site-packages/pysam/include/bcftools/gvcf.c.pysam.c lib/python3.11/site-packages/pysam/include/bcftools/gvcf.h lib/python3.11/site-packages/pysam/include/bcftools/hclust.c lib/python3.11/site-packages/pysam/include/bcftools/hclust.c.pysam.c lib/python3.11/site-packages/pysam/include/bcftools/hclust.h lib/python3.11/site-packages/pysam/include/bcftools/hex.h lib/python3.11/site-packages/pysam/include/bcftools/khash_str2str.h lib/python3.11/site-packages/pysam/include/bcftools/kheap.h lib/python3.11/site-packages/pysam/include/bcftools/kmin.c lib/python3.11/site-packages/pysam/include/bcftools/kmin.c.pysam.c lib/python3.11/site-packages/pysam/include/bcftools/kmin.h lib/python3.11/site-packages/pysam/include/bcftools/main.c lib/python3.11/site-packages/pysam/include/bcftools/main.c.pysam.c lib/python3.11/site-packages/pysam/include/bcftools/mcall.c lib/python3.11/site-packages/pysam/include/bcftools/mcall.c.pysam.c lib/python3.11/site-packages/pysam/include/bcftools/mpileup.c lib/python3.11/site-packages/pysam/include/bcftools/mpileup.c.pysam.c lib/python3.11/site-packages/pysam/include/bcftools/mw.h lib/python3.11/site-packages/pysam/include/bcftools/ploidy.c lib/python3.11/site-packages/pysam/include/bcftools/ploidy.c.pysam.c lib/python3.11/site-packages/pysam/include/bcftools/ploidy.h lib/python3.11/site-packages/pysam/include/bcftools/prob1.c lib/python3.11/site-packages/pysam/include/bcftools/prob1.c.pysam.c lib/python3.11/site-packages/pysam/include/bcftools/prob1.h lib/python3.11/site-packages/pysam/include/bcftools/rbuf.h lib/python3.11/site-packages/pysam/include/bcftools/read_consensus.c lib/python3.11/site-packages/pysam/include/bcftools/read_consensus.c.pysam.c lib/python3.11/site-packages/pysam/include/bcftools/read_consensus.h lib/python3.11/site-packages/pysam/include/bcftools/regidx.c lib/python3.11/site-packages/pysam/include/bcftools/regidx.c.pysam.c lib/python3.11/site-packages/pysam/include/bcftools/regidx.h lib/python3.11/site-packages/pysam/include/bcftools/reheader.c lib/python3.11/site-packages/pysam/include/bcftools/reheader.c.pysam.c lib/python3.11/site-packages/pysam/include/bcftools/smpl_ilist.c lib/python3.11/site-packages/pysam/include/bcftools/smpl_ilist.c.pysam.c lib/python3.11/site-packages/pysam/include/bcftools/smpl_ilist.h lib/python3.11/site-packages/pysam/include/bcftools/str_finder.c lib/python3.11/site-packages/pysam/include/bcftools/str_finder.c.pysam.c lib/python3.11/site-packages/pysam/include/bcftools/str_finder.h lib/python3.11/site-packages/pysam/include/bcftools/tabix.c lib/python3.11/site-packages/pysam/include/bcftools/tabix.c.pysam.c lib/python3.11/site-packages/pysam/include/bcftools/tsv2vcf.c lib/python3.11/site-packages/pysam/include/bcftools/tsv2vcf.c.pysam.c lib/python3.11/site-packages/pysam/include/bcftools/tsv2vcf.h lib/python3.11/site-packages/pysam/include/bcftools/utlist.h lib/python3.11/site-packages/pysam/include/bcftools/variantkey.h lib/python3.11/site-packages/pysam/include/bcftools/vcfannotate.c lib/python3.11/site-packages/pysam/include/bcftools/vcfannotate.c.pysam.c lib/python3.11/site-packages/pysam/include/bcftools/vcfbuf.c lib/python3.11/site-packages/pysam/include/bcftools/vcfbuf.c.pysam.c lib/python3.11/site-packages/pysam/include/bcftools/vcfbuf.h lib/python3.11/site-packages/pysam/include/bcftools/vcfcall.c lib/python3.11/site-packages/pysam/include/bcftools/vcfcall.c.pysam.c lib/python3.11/site-packages/pysam/include/bcftools/vcfcnv.c lib/python3.11/site-packages/pysam/include/bcftools/vcfcnv.c.pysam.c lib/python3.11/site-packages/pysam/include/bcftools/vcfconcat.c lib/python3.11/site-packages/pysam/include/bcftools/vcfconcat.c.pysam.c lib/python3.11/site-packages/pysam/include/bcftools/vcfconvert.c lib/python3.11/site-packages/pysam/include/bcftools/vcfconvert.c.pysam.c lib/python3.11/site-packages/pysam/include/bcftools/vcffilter.c lib/python3.11/site-packages/pysam/include/bcftools/vcffilter.c.pysam.c lib/python3.11/site-packages/pysam/include/bcftools/vcfgtcheck.c lib/python3.11/site-packages/pysam/include/bcftools/vcfgtcheck.c.pysam.c lib/python3.11/site-packages/pysam/include/bcftools/vcfhead.c lib/python3.11/site-packages/pysam/include/bcftools/vcfhead.c.pysam.c lib/python3.11/site-packages/pysam/include/bcftools/vcfindex.c lib/python3.11/site-packages/pysam/include/bcftools/vcfindex.c.pysam.c lib/python3.11/site-packages/pysam/include/bcftools/vcfisec.c lib/python3.11/site-packages/pysam/include/bcftools/vcfisec.c.pysam.c lib/python3.11/site-packages/pysam/include/bcftools/vcfmerge.c lib/python3.11/site-packages/pysam/include/bcftools/vcfmerge.c.pysam.c lib/python3.11/site-packages/pysam/include/bcftools/vcfnorm.c lib/python3.11/site-packages/pysam/include/bcftools/vcfnorm.c.pysam.c lib/python3.11/site-packages/pysam/include/bcftools/vcfplugin.c lib/python3.11/site-packages/pysam/include/bcftools/vcfplugin.c.pysam.c lib/python3.11/site-packages/pysam/include/bcftools/vcfquery.c lib/python3.11/site-packages/pysam/include/bcftools/vcfquery.c.pysam.c lib/python3.11/site-packages/pysam/include/bcftools/vcfroh.c lib/python3.11/site-packages/pysam/include/bcftools/vcfroh.c.pysam.c lib/python3.11/site-packages/pysam/include/bcftools/vcfsom.c lib/python3.11/site-packages/pysam/include/bcftools/vcfsom.c.pysam.c lib/python3.11/site-packages/pysam/include/bcftools/vcfsort.c lib/python3.11/site-packages/pysam/include/bcftools/vcfsort.c.pysam.c lib/python3.11/site-packages/pysam/include/bcftools/vcfstats.c lib/python3.11/site-packages/pysam/include/bcftools/vcfstats.c.pysam.c lib/python3.11/site-packages/pysam/include/bcftools/vcfview.c lib/python3.11/site-packages/pysam/include/bcftools/vcfview.c.pysam.c lib/python3.11/site-packages/pysam/include/bcftools/vcmp.c lib/python3.11/site-packages/pysam/include/bcftools/vcmp.c.pysam.c lib/python3.11/site-packages/pysam/include/bcftools/vcmp.h lib/python3.11/site-packages/pysam/include/bcftools/version.c lib/python3.11/site-packages/pysam/include/bcftools/version.c.pysam.c lib/python3.11/site-packages/pysam/include/bcftools/version.sh lib/python3.11/site-packages/pysam/include/htslib/LICENSE lib/python3.11/site-packages/pysam/include/htslib/Makefile lib/python3.11/site-packages/pysam/include/htslib/README lib/python3.11/site-packages/pysam/include/htslib/bcf_sr_sort.c lib/python3.11/site-packages/pysam/include/htslib/bcf_sr_sort.h lib/python3.11/site-packages/pysam/include/htslib/bgzf.c lib/python3.11/site-packages/pysam/include/htslib/bgzip.c lib/python3.11/site-packages/pysam/include/htslib/builddir_vars.mk.in lib/python3.11/site-packages/pysam/include/htslib/config.h lib/python3.11/site-packages/pysam/include/htslib/config.h.in lib/python3.11/site-packages/pysam/include/htslib/config.mk.in lib/python3.11/site-packages/pysam/include/htslib/configure lib/python3.11/site-packages/pysam/include/htslib/configure.ac lib/python3.11/site-packages/pysam/include/htslib/cram/cram.h lib/python3.11/site-packages/pysam/include/htslib/cram/cram_codecs.c lib/python3.11/site-packages/pysam/include/htslib/cram/cram_codecs.h lib/python3.11/site-packages/pysam/include/htslib/cram/cram_decode.c lib/python3.11/site-packages/pysam/include/htslib/cram/cram_decode.h lib/python3.11/site-packages/pysam/include/htslib/cram/cram_encode.c lib/python3.11/site-packages/pysam/include/htslib/cram/cram_encode.h lib/python3.11/site-packages/pysam/include/htslib/cram/cram_external.c lib/python3.11/site-packages/pysam/include/htslib/cram/cram_index.c lib/python3.11/site-packages/pysam/include/htslib/cram/cram_index.h lib/python3.11/site-packages/pysam/include/htslib/cram/cram_io.c lib/python3.11/site-packages/pysam/include/htslib/cram/cram_io.h lib/python3.11/site-packages/pysam/include/htslib/cram/cram_samtools.h lib/python3.11/site-packages/pysam/include/htslib/cram/cram_stats.c lib/python3.11/site-packages/pysam/include/htslib/cram/cram_stats.h lib/python3.11/site-packages/pysam/include/htslib/cram/cram_structs.h lib/python3.11/site-packages/pysam/include/htslib/cram/mFILE.c lib/python3.11/site-packages/pysam/include/htslib/cram/mFILE.h lib/python3.11/site-packages/pysam/include/htslib/cram/misc.h lib/python3.11/site-packages/pysam/include/htslib/cram/open_trace_file.c lib/python3.11/site-packages/pysam/include/htslib/cram/open_trace_file.h lib/python3.11/site-packages/pysam/include/htslib/cram/os.h lib/python3.11/site-packages/pysam/include/htslib/cram/pooled_alloc.c lib/python3.11/site-packages/pysam/include/htslib/cram/pooled_alloc.h lib/python3.11/site-packages/pysam/include/htslib/cram/string_alloc.c lib/python3.11/site-packages/pysam/include/htslib/cram/string_alloc.h lib/python3.11/site-packages/pysam/include/htslib/errmod.c lib/python3.11/site-packages/pysam/include/htslib/faidx.c lib/python3.11/site-packages/pysam/include/htslib/header.c lib/python3.11/site-packages/pysam/include/htslib/header.h lib/python3.11/site-packages/pysam/include/htslib/hfile.c lib/python3.11/site-packages/pysam/include/htslib/hfile_gcs.c lib/python3.11/site-packages/pysam/include/htslib/hfile_internal.h lib/python3.11/site-packages/pysam/include/htslib/hfile_libcurl.c lib/python3.11/site-packages/pysam/include/htslib/hfile_s3.c lib/python3.11/site-packages/pysam/include/htslib/hfile_s3_write.c lib/python3.11/site-packages/pysam/include/htslib/hts.c lib/python3.11/site-packages/pysam/include/htslib/hts_expr.c lib/python3.11/site-packages/pysam/include/htslib/hts_internal.h lib/python3.11/site-packages/pysam/include/htslib/hts_os.c lib/python3.11/site-packages/pysam/include/htslib/hts_time_funcs.h lib/python3.11/site-packages/pysam/include/htslib/htscodecs/htscodecs/arith_dynamic.c lib/python3.11/site-packages/pysam/include/htslib/htscodecs/htscodecs/arith_dynamic.h lib/python3.11/site-packages/pysam/include/htslib/htscodecs/htscodecs/c_range_coder.h lib/python3.11/site-packages/pysam/include/htslib/htscodecs/htscodecs/c_simple_model.h lib/python3.11/site-packages/pysam/include/htslib/htscodecs/htscodecs/fqzcomp_qual.c lib/python3.11/site-packages/pysam/include/htslib/htscodecs/htscodecs/fqzcomp_qual.h lib/python3.11/site-packages/pysam/include/htslib/htscodecs/htscodecs/htscodecs.c lib/python3.11/site-packages/pysam/include/htslib/htscodecs/htscodecs/htscodecs.h lib/python3.11/site-packages/pysam/include/htslib/htscodecs/htscodecs/htscodecs_endian.h lib/python3.11/site-packages/pysam/include/htslib/htscodecs/htscodecs/pack.c lib/python3.11/site-packages/pysam/include/htslib/htscodecs/htscodecs/pack.h lib/python3.11/site-packages/pysam/include/htslib/htscodecs/htscodecs/permute.h lib/python3.11/site-packages/pysam/include/htslib/htscodecs/htscodecs/pooled_alloc.h lib/python3.11/site-packages/pysam/include/htslib/htscodecs/htscodecs/rANS_byte.h lib/python3.11/site-packages/pysam/include/htslib/htscodecs/htscodecs/rANS_static.c lib/python3.11/site-packages/pysam/include/htslib/htscodecs/htscodecs/rANS_static.h lib/python3.11/site-packages/pysam/include/htslib/htscodecs/htscodecs/rANS_static16_int.h lib/python3.11/site-packages/pysam/include/htslib/htscodecs/htscodecs/rANS_static32x16pr.c lib/python3.11/site-packages/pysam/include/htslib/htscodecs/htscodecs/rANS_static32x16pr.h lib/python3.11/site-packages/pysam/include/htslib/htscodecs/htscodecs/rANS_static32x16pr_avx2.c lib/python3.11/site-packages/pysam/include/htslib/htscodecs/htscodecs/rANS_static32x16pr_avx512.c lib/python3.11/site-packages/pysam/include/htslib/htscodecs/htscodecs/rANS_static32x16pr_neon.c lib/python3.11/site-packages/pysam/include/htslib/htscodecs/htscodecs/rANS_static32x16pr_sse4.c lib/python3.11/site-packages/pysam/include/htslib/htscodecs/htscodecs/rANS_static4x16.h lib/python3.11/site-packages/pysam/include/htslib/htscodecs/htscodecs/rANS_static4x16pr.c lib/python3.11/site-packages/pysam/include/htslib/htscodecs/htscodecs/rANS_word.h lib/python3.11/site-packages/pysam/include/htslib/htscodecs/htscodecs/rle.c lib/python3.11/site-packages/pysam/include/htslib/htscodecs/htscodecs/rle.h lib/python3.11/site-packages/pysam/include/htslib/htscodecs/htscodecs/tokenise_name3.c lib/python3.11/site-packages/pysam/include/htslib/htscodecs/htscodecs/tokenise_name3.h lib/python3.11/site-packages/pysam/include/htslib/htscodecs/htscodecs/utils.c lib/python3.11/site-packages/pysam/include/htslib/htscodecs/htscodecs/utils.h lib/python3.11/site-packages/pysam/include/htslib/htscodecs/htscodecs/varint.h lib/python3.11/site-packages/pysam/include/htslib/htscodecs/htscodecs/varint2.h lib/python3.11/site-packages/pysam/include/htslib/htscodecs/htscodecs/version.h lib/python3.11/site-packages/pysam/include/htslib/htscodecs_bundled.mk lib/python3.11/site-packages/pysam/include/htslib/htscodecs_external.mk lib/python3.11/site-packages/pysam/include/htslib/htsfile.c lib/python3.11/site-packages/pysam/include/htslib/htslib.mk lib/python3.11/site-packages/pysam/include/htslib/htslib.pc.in lib/python3.11/site-packages/pysam/include/htslib/htslib/bgzf.h lib/python3.11/site-packages/pysam/include/htslib/htslib/cram.h lib/python3.11/site-packages/pysam/include/htslib/htslib/faidx.h lib/python3.11/site-packages/pysam/include/htslib/htslib/hfile.h lib/python3.11/site-packages/pysam/include/htslib/htslib/hts.h lib/python3.11/site-packages/pysam/include/htslib/htslib/hts_defs.h lib/python3.11/site-packages/pysam/include/htslib/htslib/hts_endian.h lib/python3.11/site-packages/pysam/include/htslib/htslib/hts_expr.h lib/python3.11/site-packages/pysam/include/htslib/htslib/hts_log.h lib/python3.11/site-packages/pysam/include/htslib/htslib/hts_os.h lib/python3.11/site-packages/pysam/include/htslib/htslib/kbitset.h lib/python3.11/site-packages/pysam/include/htslib/htslib/kfunc.h lib/python3.11/site-packages/pysam/include/htslib/htslib/khash.h lib/python3.11/site-packages/pysam/include/htslib/htslib/khash_str2int.h lib/python3.11/site-packages/pysam/include/htslib/htslib/klist.h lib/python3.11/site-packages/pysam/include/htslib/htslib/knetfile.h lib/python3.11/site-packages/pysam/include/htslib/htslib/kroundup.h lib/python3.11/site-packages/pysam/include/htslib/htslib/kseq.h lib/python3.11/site-packages/pysam/include/htslib/htslib/ksort.h lib/python3.11/site-packages/pysam/include/htslib/htslib/kstring.h lib/python3.11/site-packages/pysam/include/htslib/htslib/regidx.h lib/python3.11/site-packages/pysam/include/htslib/htslib/sam.h lib/python3.11/site-packages/pysam/include/htslib/htslib/synced_bcf_reader.h lib/python3.11/site-packages/pysam/include/htslib/htslib/tbx.h lib/python3.11/site-packages/pysam/include/htslib/htslib/thread_pool.h lib/python3.11/site-packages/pysam/include/htslib/htslib/vcf.h lib/python3.11/site-packages/pysam/include/htslib/htslib/vcf_sweep.h lib/python3.11/site-packages/pysam/include/htslib/htslib/vcfutils.h lib/python3.11/site-packages/pysam/include/htslib/htslib_vars.mk lib/python3.11/site-packages/pysam/include/htslib/kfunc.c lib/python3.11/site-packages/pysam/include/htslib/kstring.c lib/python3.11/site-packages/pysam/include/htslib/m4/hts_check_compile_flags_needed.m4 lib/python3.11/site-packages/pysam/include/htslib/m4/hts_hide_dynamic_syms.m4 lib/python3.11/site-packages/pysam/include/htslib/m4/hts_prog_cc_warnings.m4 lib/python3.11/site-packages/pysam/include/htslib/m4/pkg.m4 lib/python3.11/site-packages/pysam/include/htslib/md5.c lib/python3.11/site-packages/pysam/include/htslib/multipart.c lib/python3.11/site-packages/pysam/include/htslib/os/lzma_stub.h lib/python3.11/site-packages/pysam/include/htslib/os/rand.c lib/python3.11/site-packages/pysam/include/htslib/plugin.c lib/python3.11/site-packages/pysam/include/htslib/probaln.c lib/python3.11/site-packages/pysam/include/htslib/realn.c lib/python3.11/site-packages/pysam/include/htslib/regidx.c lib/python3.11/site-packages/pysam/include/htslib/region.c lib/python3.11/site-packages/pysam/include/htslib/sam.c lib/python3.11/site-packages/pysam/include/htslib/sam_internal.h lib/python3.11/site-packages/pysam/include/htslib/sam_mods.c lib/python3.11/site-packages/pysam/include/htslib/synced_bcf_reader.c lib/python3.11/site-packages/pysam/include/htslib/tabix.c lib/python3.11/site-packages/pysam/include/htslib/tbx.c lib/python3.11/site-packages/pysam/include/htslib/textutils.c lib/python3.11/site-packages/pysam/include/htslib/textutils_internal.h lib/python3.11/site-packages/pysam/include/htslib/thread_pool.c lib/python3.11/site-packages/pysam/include/htslib/thread_pool_internal.h lib/python3.11/site-packages/pysam/include/htslib/vcf.c lib/python3.11/site-packages/pysam/include/htslib/vcf_sweep.c lib/python3.11/site-packages/pysam/include/htslib/vcfutils.c lib/python3.11/site-packages/pysam/include/htslib/version.sh lib/python3.11/site-packages/pysam/include/samtools/LICENSE lib/python3.11/site-packages/pysam/include/samtools/README lib/python3.11/site-packages/pysam/include/samtools/amplicon_stats.c lib/python3.11/site-packages/pysam/include/samtools/amplicon_stats.c.pysam.c lib/python3.11/site-packages/pysam/include/samtools/bam.c lib/python3.11/site-packages/pysam/include/samtools/bam.c.pysam.c lib/python3.11/site-packages/pysam/include/samtools/bam.h lib/python3.11/site-packages/pysam/include/samtools/bam2depth.c lib/python3.11/site-packages/pysam/include/samtools/bam2depth.c.pysam.c lib/python3.11/site-packages/pysam/include/samtools/bam_addrprg.c lib/python3.11/site-packages/pysam/include/samtools/bam_addrprg.c.pysam.c lib/python3.11/site-packages/pysam/include/samtools/bam_ampliconclip.c lib/python3.11/site-packages/pysam/include/samtools/bam_ampliconclip.c.pysam.c lib/python3.11/site-packages/pysam/include/samtools/bam_ampliconclip.h lib/python3.11/site-packages/pysam/include/samtools/bam_aux.c lib/python3.11/site-packages/pysam/include/samtools/bam_aux.c.pysam.c lib/python3.11/site-packages/pysam/include/samtools/bam_cat.c lib/python3.11/site-packages/pysam/include/samtools/bam_cat.c.pysam.c lib/python3.11/site-packages/pysam/include/samtools/bam_color.c lib/python3.11/site-packages/pysam/include/samtools/bam_color.c.pysam.c lib/python3.11/site-packages/pysam/include/samtools/bam_consensus.c lib/python3.11/site-packages/pysam/include/samtools/bam_consensus.c.pysam.c lib/python3.11/site-packages/pysam/include/samtools/bam_fastq.c lib/python3.11/site-packages/pysam/include/samtools/bam_fastq.c.pysam.c lib/python3.11/site-packages/pysam/include/samtools/bam_flags.c lib/python3.11/site-packages/pysam/include/samtools/bam_flags.c.pysam.c lib/python3.11/site-packages/pysam/include/samtools/bam_import.c lib/python3.11/site-packages/pysam/include/samtools/bam_import.c.pysam.c lib/python3.11/site-packages/pysam/include/samtools/bam_index.c lib/python3.11/site-packages/pysam/include/samtools/bam_index.c.pysam.c lib/python3.11/site-packages/pysam/include/samtools/bam_lpileup.c lib/python3.11/site-packages/pysam/include/samtools/bam_lpileup.c.pysam.c lib/python3.11/site-packages/pysam/include/samtools/bam_lpileup.h lib/python3.11/site-packages/pysam/include/samtools/bam_markdup.c lib/python3.11/site-packages/pysam/include/samtools/bam_markdup.c.pysam.c lib/python3.11/site-packages/pysam/include/samtools/bam_mate.c lib/python3.11/site-packages/pysam/include/samtools/bam_mate.c.pysam.c lib/python3.11/site-packages/pysam/include/samtools/bam_md.c lib/python3.11/site-packages/pysam/include/samtools/bam_md.c.pysam.c lib/python3.11/site-packages/pysam/include/samtools/bam_plbuf.c lib/python3.11/site-packages/pysam/include/samtools/bam_plbuf.c.pysam.c lib/python3.11/site-packages/pysam/include/samtools/bam_plbuf.h lib/python3.11/site-packages/pysam/include/samtools/bam_plcmd.c lib/python3.11/site-packages/pysam/include/samtools/bam_plcmd.c.pysam.c lib/python3.11/site-packages/pysam/include/samtools/bam_quickcheck.c lib/python3.11/site-packages/pysam/include/samtools/bam_quickcheck.c.pysam.c lib/python3.11/site-packages/pysam/include/samtools/bam_reheader.c lib/python3.11/site-packages/pysam/include/samtools/bam_reheader.c.pysam.c lib/python3.11/site-packages/pysam/include/samtools/bam_rmdup.c lib/python3.11/site-packages/pysam/include/samtools/bam_rmdup.c.pysam.c lib/python3.11/site-packages/pysam/include/samtools/bam_rmdupse.c lib/python3.11/site-packages/pysam/include/samtools/bam_rmdupse.c.pysam.c lib/python3.11/site-packages/pysam/include/samtools/bam_samples.c lib/python3.11/site-packages/pysam/include/samtools/bam_samples.c.pysam.c lib/python3.11/site-packages/pysam/include/samtools/bam_sort.c lib/python3.11/site-packages/pysam/include/samtools/bam_sort.c.pysam.c lib/python3.11/site-packages/pysam/include/samtools/bam_split.c lib/python3.11/site-packages/pysam/include/samtools/bam_split.c.pysam.c lib/python3.11/site-packages/pysam/include/samtools/bam_stat.c lib/python3.11/site-packages/pysam/include/samtools/bam_stat.c.pysam.c lib/python3.11/site-packages/pysam/include/samtools/bamshuf.c lib/python3.11/site-packages/pysam/include/samtools/bamshuf.c.pysam.c lib/python3.11/site-packages/pysam/include/samtools/bamtk.c lib/python3.11/site-packages/pysam/include/samtools/bamtk.c.pysam.c lib/python3.11/site-packages/pysam/include/samtools/bedcov.c lib/python3.11/site-packages/pysam/include/samtools/bedcov.c.pysam.c lib/python3.11/site-packages/pysam/include/samtools/bedidx.c lib/python3.11/site-packages/pysam/include/samtools/bedidx.c.pysam.c lib/python3.11/site-packages/pysam/include/samtools/bedidx.h lib/python3.11/site-packages/pysam/include/samtools/config.h lib/python3.11/site-packages/pysam/include/samtools/consensus_pileup.c lib/python3.11/site-packages/pysam/include/samtools/consensus_pileup.c.pysam.c lib/python3.11/site-packages/pysam/include/samtools/consensus_pileup.h lib/python3.11/site-packages/pysam/include/samtools/coverage.c lib/python3.11/site-packages/pysam/include/samtools/coverage.c.pysam.c lib/python3.11/site-packages/pysam/include/samtools/cram_size.c lib/python3.11/site-packages/pysam/include/samtools/cram_size.c.pysam.c lib/python3.11/site-packages/pysam/include/samtools/cut_target.c lib/python3.11/site-packages/pysam/include/samtools/cut_target.c.pysam.c lib/python3.11/site-packages/pysam/include/samtools/dict.c lib/python3.11/site-packages/pysam/include/samtools/dict.c.pysam.c lib/python3.11/site-packages/pysam/include/samtools/faidx.c lib/python3.11/site-packages/pysam/include/samtools/faidx.c.pysam.c lib/python3.11/site-packages/pysam/include/samtools/lz4/LICENSE lib/python3.11/site-packages/pysam/include/samtools/lz4/lz4.c lib/python3.11/site-packages/pysam/include/samtools/lz4/lz4.c.pysam.c lib/python3.11/site-packages/pysam/include/samtools/lz4/lz4.h lib/python3.11/site-packages/pysam/include/samtools/padding.c lib/python3.11/site-packages/pysam/include/samtools/padding.c.pysam.c lib/python3.11/site-packages/pysam/include/samtools/phase.c lib/python3.11/site-packages/pysam/include/samtools/phase.c.pysam.c lib/python3.11/site-packages/pysam/include/samtools/reference.c lib/python3.11/site-packages/pysam/include/samtools/reference.c.pysam.c lib/python3.11/site-packages/pysam/include/samtools/reset.c lib/python3.11/site-packages/pysam/include/samtools/reset.c.pysam.c lib/python3.11/site-packages/pysam/include/samtools/sam_opts.c lib/python3.11/site-packages/pysam/include/samtools/sam_opts.c.pysam.c lib/python3.11/site-packages/pysam/include/samtools/sam_opts.h lib/python3.11/site-packages/pysam/include/samtools/sam_utils.c lib/python3.11/site-packages/pysam/include/samtools/sam_utils.c.pysam.c lib/python3.11/site-packages/pysam/include/samtools/sam_utils.h lib/python3.11/site-packages/pysam/include/samtools/sam_view.c lib/python3.11/site-packages/pysam/include/samtools/sam_view.c.pysam.c lib/python3.11/site-packages/pysam/include/samtools/sample.c lib/python3.11/site-packages/pysam/include/samtools/sample.c.pysam.c lib/python3.11/site-packages/pysam/include/samtools/sample.h lib/python3.11/site-packages/pysam/include/samtools/samtools.h lib/python3.11/site-packages/pysam/include/samtools/samtools.pysam.c lib/python3.11/site-packages/pysam/include/samtools/samtools.pysam.h lib/python3.11/site-packages/pysam/include/samtools/splaysort.h lib/python3.11/site-packages/pysam/include/samtools/stats.c lib/python3.11/site-packages/pysam/include/samtools/stats.c.pysam.c lib/python3.11/site-packages/pysam/include/samtools/stats_isize.c lib/python3.11/site-packages/pysam/include/samtools/stats_isize.c.pysam.c lib/python3.11/site-packages/pysam/include/samtools/stats_isize.h lib/python3.11/site-packages/pysam/include/samtools/tmp_file.c lib/python3.11/site-packages/pysam/include/samtools/tmp_file.c.pysam.c lib/python3.11/site-packages/pysam/include/samtools/tmp_file.h lib/python3.11/site-packages/pysam/include/samtools/version.sh lib/python3.11/site-packages/pysam/libcalignedsegment.cpython-311-x86_64-linux-gnu.so lib/python3.11/site-packages/pysam/libcalignedsegment.pxd lib/python3.11/site-packages/pysam/libcalignedsegment.pyi lib/python3.11/site-packages/pysam/libcalignedsegment.pyx lib/python3.11/site-packages/pysam/libcalignmentfile.cpython-311-x86_64-linux-gnu.so lib/python3.11/site-packages/pysam/libcalignmentfile.pxd lib/python3.11/site-packages/pysam/libcalignmentfile.pyi lib/python3.11/site-packages/pysam/libcalignmentfile.pyx lib/python3.11/site-packages/pysam/libcbcf.cpython-311-x86_64-linux-gnu.so lib/python3.11/site-packages/pysam/libcbcf.pxd lib/python3.11/site-packages/pysam/libcbcf.pyi lib/python3.11/site-packages/pysam/libcbcf.pyx lib/python3.11/site-packages/pysam/libcbcftools.cpython-311-x86_64-linux-gnu.so lib/python3.11/site-packages/pysam/libcbcftools.pxd lib/python3.11/site-packages/pysam/libcbcftools.pyi lib/python3.11/site-packages/pysam/libcbcftools.pyx lib/python3.11/site-packages/pysam/libcbgzf.cpython-311-x86_64-linux-gnu.so lib/python3.11/site-packages/pysam/libcbgzf.pyi lib/python3.11/site-packages/pysam/libcbgzf.pyx lib/python3.11/site-packages/pysam/libcfaidx.cpython-311-x86_64-linux-gnu.so lib/python3.11/site-packages/pysam/libcfaidx.pxd lib/python3.11/site-packages/pysam/libcfaidx.pyi lib/python3.11/site-packages/pysam/libcfaidx.pyx lib/python3.11/site-packages/pysam/libchtslib.cpython-311-x86_64-linux-gnu.so lib/python3.11/site-packages/pysam/libchtslib.pxd lib/python3.11/site-packages/pysam/libchtslib.pyi lib/python3.11/site-packages/pysam/libchtslib.pyx lib/python3.11/site-packages/pysam/libcsamfile.cpython-311-x86_64-linux-gnu.so lib/python3.11/site-packages/pysam/libcsamfile.pxd lib/python3.11/site-packages/pysam/libcsamfile.pyi lib/python3.11/site-packages/pysam/libcsamfile.pyx lib/python3.11/site-packages/pysam/libcsamtools.cpython-311-x86_64-linux-gnu.so lib/python3.11/site-packages/pysam/libcsamtools.pxd lib/python3.11/site-packages/pysam/libcsamtools.pyi lib/python3.11/site-packages/pysam/libcsamtools.pyx lib/python3.11/site-packages/pysam/libctabix.cpython-311-x86_64-linux-gnu.so lib/python3.11/site-packages/pysam/libctabix.pxd lib/python3.11/site-packages/pysam/libctabix.pyi lib/python3.11/site-packages/pysam/libctabix.pyx lib/python3.11/site-packages/pysam/libctabixproxies.cpython-311-x86_64-linux-gnu.so lib/python3.11/site-packages/pysam/libctabixproxies.pxd lib/python3.11/site-packages/pysam/libctabixproxies.pyi lib/python3.11/site-packages/pysam/libctabixproxies.pyx lib/python3.11/site-packages/pysam/libcutils.cpython-311-x86_64-linux-gnu.so lib/python3.11/site-packages/pysam/libcutils.pxd lib/python3.11/site-packages/pysam/libcutils.pyi lib/python3.11/site-packages/pysam/libcutils.pyx lib/python3.11/site-packages/pysam/libcvcf.cpython-311-x86_64-linux-gnu.so lib/python3.11/site-packages/pysam/libcvcf.pxd lib/python3.11/site-packages/pysam/libcvcf.pyi lib/python3.11/site-packages/pysam/libcvcf.pyx lib/python3.11/site-packages/pysam/py.typed lib/python3.11/site-packages/pysam/pysam_stream.h lib/python3.11/site-packages/pysam/pysam_util.c lib/python3.11/site-packages/pysam/pysam_util.h lib/python3.11/site-packages/pysam/samtools.py lib/python3.11/site-packages/pysam/utils.py lib/python3.11/site-packages/pysam/version.h lib/python3.11/site-packages/pysam/version.py lib/python3.11/site-packages/pysam/version.pyi