ó
gbc           @   sy   d  d l  m Z m Z d e f d     YZ d e f d     YZ d d d d d d d	  Z d d d
 d d d  Z d S(   i˙˙˙˙(   t   DAGt   DAGNodet
   RootedTreec           B   s,   e  Z d d d d d   Z d d d  Z RS(   c         K   sn   |  j  | |  } |  j  | |  } | |  j k sR | |  j | k sR t d   t j |  d | d | | S(   Ns0   Child node cannot have more than one parent nodet   indexpt   index(   t   addNodet   _parentst   AssertionErrorR    t   addEdge(   t   selft   parentt   nodeR   R   t   data(    (    s8   lib/python2.7/site-packages/obitools/graph/rootedtree.pyR      s
    %	c         C   s1   | d  k r$ |  j j | t  } n  t | |   S(   N(   t   Nonet   _indext   getIndext   Truet   RootedTreeNode(   R	   R   R   (    (    s8   lib/python2.7/site-packages/obitools/graph/rootedtree.pyt   getNode   s    N(   t   __name__t
   __module__R   R   R   (    (    (    s8   lib/python2.7/site-packages/obitools/graph/rootedtree.pyR      s   	R   c           B   s   e  Z d    Z d   Z RS(   c         C   s+   d } x |  D] } | | j    7} q W| S(   Ni   (   t   subTreeSize(   R	   t   nt   subnode(    (    s8   lib/python2.7/site-packages/obitools/graph/rootedtree.pyR      s    c         C   s5   |  s
 d Sd } x |  D] } | | j    7} q W| S(   Ni   i    (   t   subTreeLeaves(   R	   R   R   (    (    s8   lib/python2.7/site-packages/obitools/graph/rootedtree.pyR      s    (   R   R   R   R   (    (    (    s8   lib/python2.7/site-packages/obitools/graph/rootedtree.pyR      s   	i    t   distancet	   bootstrapc         C   sę  |  j    } | d  k r$ |  j } nV t |  r? | |   } n; t | t  rt | |  k rt |  | } | j |  n d } | |  k r¤ d |  | }	 | j |  n d }	 g  | D] }
 d |
 |  |
 f ^ qą } | d  k	 r| |   r| j d |  j    n  | d  k	 r+| |   r+| j d  n  | rKd d j	 |  d } n d } d	 d
 | d } | j	 g  |  D]. } t
 | | d | | | d | d | ^ qp } | rÖd d
 | d | d d
 | d } n  d | | | |	 f S(   Nt    s   :%6.5fs   %s=%ss   !cartoon={%d,0.0}s   !collapse={"collapsed",0.0}s   [&t   ,t   ]s   ,
t    i   t   cartoont   collapses   (
s   
t   )s
   %s"%s"%s%s(   t   keysR   t   labelt   callablet
   isinstancet   strt   removet   appendR   t   joint
   nodeWriter(   R   t   deepR#   R   R   R   R    t   kst   namet   distt   kt   nodeseparatort   xt   subnodes(    (    s8   lib/python2.7/site-packages/obitools/graph/rootedtree.pyR*   &   s6    
'	;)R   c         C   s1  d } g  } x |  D] } | d  k r1 | j }	 nI t |  rL | |  }	 n. t | t  rt | | k rt | | }	 n d }	 |	 r | j d |	  q q Wd t |  }
 |
 d j |  7}
 |
 d 7}
 | d  k	 rÝ | g } n |  j   } t	 | d d | d | d	 | } d
 | d } | |
 | d | d S(   Ns   #NEXUS
R   s   "%s"s-   begin taxa;
	dimensions ntax=%d;
	taxlabels
	s   
	s	   
;
end;

i    R   R    s!   begin trees;
	tree tree_1 = [&R] s   ;
end;

s   

s   
(
   R   R#   R$   R%   R&   R(   t   lenR)   t   getRootsR*   (   t   treet	   startnodeR#   t   blocksR   R    t   headt   txR   R-   t   taxat   rootst   trees(    (    s8   lib/python2.7/site-packages/obitools/graph/rootedtree.pyt   nexusFormatS   s*    
"N(   t   obitools.graph.dagR    R   R   R   R   R*   R=   (    (    (    s8   lib/python2.7/site-packages/obitools/graph/rootedtree.pyt   <module>   s   -