# This file created by conda-build 3.24.0
# meta.yaml template originally from:
# /opt/recipe, last modified Wed Jun  7 21:08:57 2023
# ------------------------------------------------

package:
  name: kraken2
  version: 2.1.3
source:
  patches:
    - Makefile.patch
  sha256: 5269fa14adfb02e38c2da2e605e909a432d76c680d73e2e0e80e27ccd04d7c69
  url: https://github.com/DerrickWood/kraken2/archive/v2.1.3.tar.gz
build:
  number: '0'
  string: pl5321hdcf5f25_0
requirements:
  build:
    - _libgcc_mutex 0.1 conda_forge
    - _openmp_mutex 4.5 2_gnu
    - binutils_impl_linux-64 2.39 he00db2b_1
    - binutils_linux-64 2.39 h5fc0e48_13
    - gcc_impl_linux-64 12.2.0 hcc96c02_19
    - gcc_linux-64 12.2.0 h4798a0e_13
    - gxx_impl_linux-64 12.2.0 hcc96c02_19
    - gxx_linux-64 12.2.0 hb41e900_13
    - kernel-headers_linux-64 2.6.32 he073ed8_15
    - ld_impl_linux-64 2.39 hcc3a1bd_1
    - libgcc-devel_linux-64 12.2.0 h3b97bd3_19
    - libgcc-ng 13.1.0 he5830b7_0
    - libgomp 13.1.0 he5830b7_0
    - libsanitizer 12.2.0 h46fd767_19
    - libstdcxx-devel_linux-64 12.2.0 h3b97bd3_19
    - libstdcxx-ng 13.1.0 hfd8a6a1_0
    - make 4.3 hd18ef5c_1
    - sysroot_linux-64 2.12 he073ed8_15
  host:
    - _libgcc_mutex 0.1 conda_forge
    - _openmp_mutex 4.5 2_gnu
    - ca-certificates 2023.5.7 hbcca054_0
    - gettext 0.21.1 h27087fc_0
    - libgcc-ng 13.1.0 he5830b7_0
    - libgomp 13.1.0 he5830b7_0
    - libiconv 1.17 h166bdaf_0
    - libidn2 2.3.4 h166bdaf_0
    - libnsl 2.0.0 h7f98852_0
    - libstdcxx-ng 13.1.0 hfd8a6a1_0
    - libunistring 0.9.10 h7f98852_0
    - libzlib 1.2.13 h166bdaf_4
    - lz4-c 1.9.4 hcb278e6_0
    - openssl 3.1.1 hd590300_1
    - perl 5.32.1 2_h7f98852_perl5
    - popt 1.16 h0b475e3_2002
    - rsync 3.2.7 h70740c4_0
    - tar 1.34 hb2e2bae_1
    - wget 1.20.3 ha35d2d1_1
    - xxhash 0.8.0 h7f98852_3
    - zlib 1.2.13 h166bdaf_4
    - zstd 1.5.2 h3eb15da_6
  run:
    - _openmp_mutex >=4.5
    - blast
    - libgcc-ng >=12
    - libstdcxx-ng >=12
    - libzlib >=1.2.13,<1.3.0a0
    - perl >=5.32.1,<5.33.0a0 *_perl5
test:
  commands:
    - kraken2 --version
    - kraken2-build --version
    - kraken2-inspect --version
about:
  dev_url: https://github.com/DerrickWood/kraken2
  home: https://ccb.jhu.edu/software/kraken2/
  license: GPLv3
  license_file: LICENSE
  summary: Kraken2 is a system for assigning taxonomic labels to short DNA sequences,
    usually obtained through metagenomic studies.
extra:
  copy_test_source_files: true
  final: true
  identifiers:
    - biotools:kraken2
    - doi:10.1186/gb-2014-15-3-r46
    - doi:10.1186/s13059-019-1891-0
