# This file created by conda-build 3.24.0
# meta.yaml template originally from:
# /opt/recipe, last modified Mon May 15 19:51:50 2023
# ------------------------------------------------

package:
  name: bwa
  version: 0.7.17
source:
  patches:
    - Makefile.patch
  sha256: 980b9591b61c60042c4a39b9e31ccaad8d17ff179d44d347997825da3fdf47fd
  url: https://github.com/lh3/bwa/archive/v0.7.17.tar.gz
build:
  number: '11'
  string: he4a0461_11
requirements:
  build:
    - _libgcc_mutex 0.1 conda_forge
    - _openmp_mutex 4.5 2_gnu
    - binutils_impl_linux-64 2.39 he00db2b_1
    - binutils_linux-64 2.39 h5fc0e48_13
    - gcc_impl_linux-64 12.2.0 hcc96c02_19
    - gcc_linux-64 12.2.0 h4798a0e_13
    - kernel-headers_linux-64 2.6.32 he073ed8_15
    - ld_impl_linux-64 2.39 hcc3a1bd_1
    - libgcc-devel_linux-64 12.2.0 h3b97bd3_19
    - libgcc-ng 12.2.0 h65d4601_19
    - libgomp 12.2.0 h65d4601_19
    - libsanitizer 12.2.0 h46fd767_19
    - libstdcxx-ng 12.2.0 h46fd767_19
    - make 4.3 hd18ef5c_1
    - sysroot_linux-64 2.12 he073ed8_15
  host:
    - _libgcc_mutex 0.1 conda_forge
    - _openmp_mutex 4.5 2_gnu
    - libgcc-ng 12.2.0 h65d4601_19
    - libgomp 12.2.0 h65d4601_19
    - libzlib 1.2.13 h166bdaf_4
    - zlib 1.2.13 h166bdaf_4
  run:
    - libgcc-ng >=12
    - libzlib >=1.2.13,<1.3.0a0
    - perl
    - zlib
test:
  commands:
    - bwa 2>&1 | grep "index sequences in the"
    - which xa2multi.pl
    - which qualfa2fq.pl
about:
  home: https://github.com/lh3/bwa
  license: GPL3
  license_file: COPYING
  summary: The BWA read mapper.
extra:
  copy_test_source_files: true
  final: true
  identifiers:
    - biotools:bwa
    - usegalaxy-eu:bwa
    - usegalaxy-eu:bwa_mem
