# This file created by conda-build 24.5.1
# meta.yaml template originally from:
# /opt/recipe, last modified Tue Aug 20 13:45:11 2024
# ------------------------------------------------

package:
  name: bowtie2
  version: 2.5.4
source:
  sha256: 841a6a60111b690c11d1e123cb5c11560b4cd1502b5cee7e394fd50f83e74e13
  url: https://github.com/BenLangmead/bowtie2/archive/v2.5.4.tar.gz
build:
  number: '4'
  run_exports:
    - bowtie2 >=2.5.4,<3.0a0
  string: h7071971_4
requirements:
  build:
    - _libgcc_mutex 0.1 conda_forge
    - _openmp_mutex 4.5 2_gnu
    - _sysroot_linux-64_curr_repodata_hack 3 h69a702a_16
    - binutils_impl_linux-64 2.40 ha1999f0_7
    - binutils_linux-64 2.40 hb3c18ed_0
    - bzip2 1.0.8 h4bc722e_7
    - c-ares 1.32.3 h4bc722e_0
    - ca-certificates 2024.7.4 hbcca054_0
    - cmake 3.30.2 hf8c4bd3_0
    - gcc_impl_linux-64 12.4.0 hb2e57f8_0
    - gcc_linux-64 12.4.0 h6b7512a_0
    - git 2.46.0 pl5321hb5640b7_0
    - gxx_impl_linux-64 12.4.0 h613a52c_0
    - gxx_linux-64 12.4.0 h8489865_0
    - kernel-headers_linux-64 3.10.0 h4a8ded7_16
    - keyutils 1.6.1 h166bdaf_0
    - krb5 1.21.3 h659f571_0
    - ld_impl_linux-64 2.40 hf3520f5_7
    - libcurl 8.9.1 hdb1bdb2_0
    - libedit 3.1.20191231 he28a2e2_2
    - libev 4.33 hd590300_2
    - libexpat 2.6.2 h59595ed_0
    - libgcc-devel_linux-64 12.4.0 ha4f9413_100
    - libgcc-ng 14.1.0 h77fa898_0
    - libgomp 14.1.0 h77fa898_0
    - libiconv 1.17 hd590300_2
    - libnghttp2 1.58.0 h47da74e_1
    - libsanitizer 12.4.0 h46f95d5_0
    - libssh2 1.11.0 h0841786_0
    - libstdcxx-devel_linux-64 12.4.0 ha4f9413_100
    - libstdcxx-ng 14.1.0 hc0a3c3a_0
    - libuv 1.48.0 hd590300_0
    - libxcrypt 4.4.36 hd590300_1
    - libzlib 1.3.1 h4ab18f5_1
    - make 4.3 hd18ef5c_1
    - ncurses 6.5 h59595ed_0
    - openssl 3.3.1 h4bc722e_2
    - pcre2 10.44 hba22ea6_2
    - perl 5.32.1 7_hd590300_perl5
    - rhash 1.4.4 hd590300_0
    - sysroot_linux-64 2.17 h4a8ded7_16
    - tzdata 2024a h0c530f3_0
    - xz 5.2.6 h166bdaf_0
    - zstd 1.5.6 ha6fb4c9_0
  host:
    - _libgcc_mutex 0.1 conda_forge
    - _openmp_mutex 4.5 2_gnu
    - libgcc-ng 14.1.0 h77fa898_0
    - libgomp 14.1.0 h77fa898_0
    - libstdcxx-ng 14.1.0 hc0a3c3a_0
    - libzlib 1.2.13 h4ab18f5_6
    - zlib 1.2.13 h4ab18f5_6
    - zstd 1.5.6 ha6fb4c9_0
  run:
    - _openmp_mutex >=4.5
    - libgcc-ng >=12
    - libgomp
    - libstdcxx-ng >=12
    - libzlib >=1.2.13,<2.0a0
    - perl
    - python
    - zstd >=1.5.6,<1.6.0a0
test:
  commands:
    - bowtie2 --help
    - bowtie2 --version
    - bowtie2 --version | grep -q "bowtie2-align-s version [0-9]"
    - bowtie2-align-l --help
    - bowtie2-align-s --help
    - bowtie2-build --help
    - bowtie2-build-l --help
    - bowtie2-build-s --help
    - bowtie2-inspect --help
    - bowtie2-inspect-l --help
    - bowtie2-inspect-s --help
about:
  dev_url: https://github.com/BenLangmead/bowtie2
  doc_url: https://github.com/BenLangmead/bowtie2/blob/master/README.md
  home: https://bowtie-bio.sourceforge.net/bowtie2/index.shtml
  license: GPL-3.0-only
  license_family: GPL3
  license_file: LICENSE
  summary: A fast and sensitive gapped read aligner.
extra:
  additional-platforms:
    - linux-aarch64
    - osx-arm64
  copy_test_source_files: true
  final: true
  identifiers:
    - biotools:bowtie2
    - debian:bowtie2
    - doi:10.1038/nmeth.1923
    - usegalaxy-eu:bowtie2
