# This file created by conda-build 3.24.0
# meta.yaml template originally from:
# /opt/recipe, last modified Sat Oct 14 05:21:04 2023
# ------------------------------------------------

package:
  name: bowtie2
  version: 2.5.2
source:
  sha256: 2f86dbfbf3dcb8521d559f830594fe28ac6e4c40d81313a8c2bfb17c82a501e0
  url: https://github.com/BenLangmead/bowtie2/archive/v2.5.2.tar.gz
build:
  number: '0'
  run_exports:
    - bowtie2 >=2.5.2,<3.0a0
  string: py38he00c5e5_0
requirements:
  build:
    - _libgcc_mutex 0.1 conda_forge
    - _openmp_mutex 4.5 2_gnu
    - binutils_impl_linux-64 2.40 hf600244_0
    - binutils_linux-64 2.40 hbdbef99_2
    - gcc_impl_linux-64 12.3.0 he2b93b0_2
    - gcc_linux-64 12.3.0 h76fc315_2
    - gxx_impl_linux-64 12.3.0 he2b93b0_2
    - gxx_linux-64 12.3.0 h8a814eb_2
    - kernel-headers_linux-64 2.6.32 he073ed8_16
    - ld_impl_linux-64 2.40 h41732ed_0
    - libgcc-devel_linux-64 12.3.0 h8bca6fd_2
    - libgcc-ng 13.2.0 h807b86a_2
    - libgomp 13.2.0 h807b86a_2
    - libsanitizer 12.3.0 h0f45ef3_2
    - libstdcxx-devel_linux-64 12.3.0 h8bca6fd_2
    - libstdcxx-ng 13.2.0 h7e041cc_2
    - make 4.3 hd18ef5c_1
    - sysroot_linux-64 2.12 he073ed8_16
  host:
    - _libgcc_mutex 0.1 conda_forge
    - _openmp_mutex 4.5 2_gnu
    - bzip2 1.0.8 h7f98852_4
    - ca-certificates 2023.7.22 hbcca054_0
    - icu 73.2 h59595ed_0
    - ld_impl_linux-64 2.40 h41732ed_0
    - libffi 3.4.2 h7f98852_5
    - libgcc-ng 13.2.0 h807b86a_2
    - libgomp 13.2.0 h807b86a_2
    - libhwloc 2.9.3 default_h554bfaf_1009
    - libiconv 1.17 h166bdaf_0
    - libnsl 2.0.0 hd590300_1
    - libsqlite 3.43.2 h2797004_0
    - libstdcxx-ng 13.2.0 h7e041cc_2
    - libuuid 2.38.1 h0b41bf4_0
    - libxml2 2.11.5 h232c23b_1
    - libzlib 1.2.13 hd590300_5
    - ncurses 6.4 hcb278e6_0
    - openssl 3.1.3 hd590300_0
    - pip 23.2.1 pyhd8ed1ab_0
    - python 3.8.18 hd12c33a_0_cpython
    - readline 8.2 h8228510_1
    - setuptools 68.2.2 pyhd8ed1ab_0
    - tbb 2021.10.0 h00ab1b0_1
    - tbb-devel 2021.10.0 h00ab1b0_1
    - tk 8.6.13 h2797004_0
    - wheel 0.41.2 pyhd8ed1ab_0
    - xz 5.2.6 h166bdaf_0
    - zlib 1.2.13 hd590300_5
    - zstd 1.5.5 hfc55251_0
  run:
    - libgcc-ng >=12
    - libstdcxx-ng >=12
    - libzlib >=1.2.13,<1.3.0a0
    - perl
    - python >=3.8,<3.9.0a0
    - python_abi 3.8.* *_cp38
    - tbb >=2021.10.0
    - zlib
    - zstd >=1.5.5,<1.6.0a0
test:
  commands:
    - bowtie2 --help
    - bowtie2 --version
    - bowtie2 --version | grep -q "bowtie2-align-s version [0-9]"
    - bowtie2-align-l --help
    - bowtie2-align-s --help
    - bowtie2-build --help
    - bowtie2-build-l --help
    - bowtie2-build-s --help
    - bowtie2-inspect --help
    - bowtie2-inspect-l --help
    - bowtie2-inspect-s --help
about:
  home: http://bowtie-bio.sourceforge.net/bowtie2/index.shtml
  license: GPL-3.0-only
  license_family: GPL3
  license_file: LICENSE
  summary: Fast and sensitive gapped read alignment
extra:
  copy_test_source_files: true
  final: true
  identifiers:
    - biotools:bowtie2
    - debian:bowtie2
    - doi:10.1038/nmeth.1923
    - usegalaxy-eu:bowtie2
