# This file created by conda-build 3.24.0
# meta.yaml template originally from:
# /opt/recipe, last modified Tue May 16 05:39:45 2023
# ------------------------------------------------

package:
  name: bowtie2
  version: 2.5.1
source:
  sha256: 3fe00f4f89b5dd85fd9317e2168ec93f30dbb75d7950a08516c767d21eca7c27
  url: https://github.com/BenLangmead/bowtie2/archive/v2.5.1.tar.gz
build:
  number: '2'
  string: py38he00c5e5_2
requirements:
  build:
    - _libgcc_mutex 0.1 conda_forge
    - _openmp_mutex 4.5 2_gnu
    - binutils_impl_linux-64 2.39 he00db2b_1
    - binutils_linux-64 2.39 h5fc0e48_13
    - gcc_impl_linux-64 12.2.0 hcc96c02_19
    - gcc_linux-64 12.2.0 h4798a0e_13
    - gxx_impl_linux-64 12.2.0 hcc96c02_19
    - gxx_linux-64 12.2.0 hb41e900_13
    - kernel-headers_linux-64 2.6.32 he073ed8_15
    - ld_impl_linux-64 2.39 hcc3a1bd_1
    - libgcc-devel_linux-64 12.2.0 h3b97bd3_19
    - libgcc-ng 12.2.0 h65d4601_19
    - libgomp 12.2.0 h65d4601_19
    - libsanitizer 12.2.0 h46fd767_19
    - libstdcxx-devel_linux-64 12.2.0 h3b97bd3_19
    - libstdcxx-ng 12.2.0 h46fd767_19
    - make 4.3 hd18ef5c_1
    - sysroot_linux-64 2.12 he073ed8_15
  host:
    - _libgcc_mutex 0.1 conda_forge
    - _openmp_mutex 4.5 2_gnu
    - bzip2 1.0.8 h7f98852_4
    - ca-certificates 2023.5.7 hbcca054_0
    - icu 72.1 hcb278e6_0
    - ld_impl_linux-64 2.40 h41732ed_0
    - libffi 3.4.2 h7f98852_5
    - libgcc-ng 12.2.0 h65d4601_19
    - libgomp 12.2.0 h65d4601_19
    - libhwloc 2.9.1 hd6dc26d_0
    - libiconv 1.17 h166bdaf_0
    - libnsl 2.0.0 h7f98852_0
    - libsqlite 3.41.2 h2797004_1
    - libstdcxx-ng 12.2.0 h46fd767_19
    - libuuid 2.38.1 h0b41bf4_0
    - libxml2 2.10.4 hfdac1af_0
    - libzlib 1.2.13 h166bdaf_4
    - ncurses 6.3 h27087fc_1
    - openssl 3.1.0 hd590300_3
    - pip 23.1.2 pyhd8ed1ab_0
    - python 3.8.16 he550d4f_1_cpython
    - readline 8.2 h8228510_1
    - setuptools 67.7.2 pyhd8ed1ab_0
    - tbb 2021.9.0 hf52228f_0
    - tbb-devel 2021.9.0 hf52228f_0
    - tk 8.6.12 h27826a3_0
    - wheel 0.40.0 pyhd8ed1ab_0
    - xz 5.2.6 h166bdaf_0
    - zlib 1.2.13 h166bdaf_4
    - zstd 1.5.2 h3eb15da_6
  run:
    - libgcc-ng >=12
    - libstdcxx-ng >=12
    - libzlib >=1.2.13,<1.3.0a0
    - perl
    - python >=3.8,<3.9.0a0
    - python_abi 3.8.* *_cp38
    - tbb >=2021.9.0
    - zlib
    - zstd >=1.5.2,<1.6.0a0
test:
  commands:
    - bowtie2 --help
    - bowtie2 --version
    - bowtie2 --version | grep -q "bowtie2-align-s version [0-9]"
    - bowtie2-align-l --help
    - bowtie2-align-s --help
    - bowtie2-build --help
    - bowtie2-build-l --help
    - bowtie2-build-s --help
    - bowtie2-inspect --help
    - bowtie2-inspect-l --help
    - bowtie2-inspect-s --help
about:
  home: http://bowtie-bio.sourceforge.net/bowtie2/index.shtml
  license: GPL-3.0-only
  license_file: LICENSE
  summary: Fast and sensitive gapped read alignment
extra:
  copy_test_source_files: true
  final: true
  identifiers:
    - biotools:bowtie2
    - debian:bowtie2
    - doi:10.1038/nmeth.1923
    - usegalaxy-eu:bowtie2
