# This file created by conda-build 3.21.8
# meta.yaml template originally from:
# /opt/recipe, last modified Tue Jan 31 02:35:08 2023
# ------------------------------------------------

package:
  name: bowtie2
  version: 2.5.1
source:
  sha256: 3fe00f4f89b5dd85fd9317e2168ec93f30dbb75d7950a08516c767d21eca7c27
  url: https://github.com/BenLangmead/bowtie2/archive/v2.5.1.tar.gz
build:
  number: '0'
  string: py38h77f66f0_0
requirements:
  build:
    - _libgcc_mutex 0.1 conda_forge
    - _openmp_mutex 4.5 2_gnu
    - binutils_impl_linux-64 2.39 he00db2b_1
    - binutils_linux-64 2.39 h5fc0e48_11
    - gcc_impl_linux-64 10.4.0 h5231bdf_19
    - gcc_linux-64 10.4.0 h9215b83_11
    - gxx_impl_linux-64 10.4.0 h5231bdf_19
    - gxx_linux-64 10.4.0 h6e491c6_11
    - kernel-headers_linux-64 2.6.32 he073ed8_15
    - ld_impl_linux-64 2.39 hcc3a1bd_1
    - libgcc-devel_linux-64 10.4.0 hd38fd1e_19
    - libgcc-ng 12.2.0 h65d4601_19
    - libgomp 12.2.0 h65d4601_19
    - libsanitizer 10.4.0 h5246dfb_19
    - libstdcxx-devel_linux-64 10.4.0 hd38fd1e_19
    - libstdcxx-ng 12.2.0 h46fd767_19
    - make 4.3 hd18ef5c_1
    - sysroot_linux-64 2.12 he073ed8_15
  host:
    - _libgcc_mutex 0.1 conda_forge
    - _openmp_mutex 4.5 2_gnu
    - bzip2 1.0.8 h7f98852_4
    - ca-certificates 2022.12.7 ha878542_0
    - icu 70.1 h27087fc_0
    - ld_impl_linux-64 2.40 h41732ed_0
    - libffi 3.4.2 h7f98852_5
    - libgcc-ng 12.2.0 h65d4601_19
    - libgomp 12.2.0 h65d4601_19
    - libhwloc 2.8.0 h32351e8_1
    - libiconv 1.17 h166bdaf_0
    - libnsl 2.0.0 h7f98852_0
    - libsqlite 3.40.0 h753d276_0
    - libstdcxx-ng 12.2.0 h46fd767_19
    - libuuid 2.32.1 h7f98852_1000
    - libxml2 2.10.3 h7463322_0
    - libzlib 1.2.13 h166bdaf_4
    - ncurses 6.3 h27087fc_1
    - openssl 3.0.7 h0b41bf4_2
    - pip 22.3.1 pyhd8ed1ab_0
    - python 3.8.15 he550d4f_1_cpython
    - readline 8.1.2 h0f457ee_0
    - setuptools 66.1.1 pyhd8ed1ab_0
    - tbb 2021.7.0 h924138e_1
    - tbb-devel 2021.7.0 h924138e_1
    - tk 8.6.12 h27826a3_0
    - wheel 0.38.4 pyhd8ed1ab_0
    - xz 5.2.6 h166bdaf_0
    - zlib 1.2.13 h166bdaf_4
    - zstd 1.5.2 h3eb15da_6
  run:
    - libgcc-ng >=12
    - libstdcxx-ng >=12
    - libzlib >=1.2.13,<1.3.0a0
    - perl
    - python >=3.8,<3.9.0a0
    - python_abi 3.8.* *_cp38
    - tbb >=2021.7.0
    - zlib >=1.2.13,<1.3.0a0
    - zstd >=1.5.2,<1.6.0a0
test:
  commands:
    - bowtie2 --help
    - bowtie2 --version
    - bowtie2 --version | grep -q "bowtie2-align-s version [0-9]"
    - bowtie2-align-l --help
    - bowtie2-align-s --help
    - bowtie2-build --help
    - bowtie2-build-l --help
    - bowtie2-build-s --help
    - bowtie2-inspect --help
    - bowtie2-inspect-l --help
    - bowtie2-inspect-s --help
about:
  home: http://bowtie-bio.sourceforge.net/bowtie2/index.shtml
  license: GPL-3.0-only
  license_file: LICENSE
  summary: Fast and sensitive gapped read alignment
extra:
  copy_test_source_files: true
  final: true
  identifiers:
    - biotools:bowtie2
    - debian:bowtie2
    - doi:10.1038/nmeth.1923
    - usegalaxy-eu:bowtie2
