{% set version = "1.44.0" %}
{% set name = "VariantAnnotation" %}
{% set bioc = "3.16" %}

package:
  name: 'bioconductor-{{ name|lower }}'
  version: '{{ version }}'
source:
  url:
    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
  md5: 1eb1ca84bbc69638b2842176d03b01a1
build:
  number: 1
  rpaths:
    - lib/R/lib/
    - lib/
# Suggests: RUnit, AnnotationHub, BSgenome.Hsapiens.UCSC.hg19, TxDb.Hsapiens.UCSC.hg19.knownGene, SNPlocs.Hsapiens.dbSNP144.GRCh37, SIFT.Hsapiens.dbSNP132, SIFT.Hsapiens.dbSNP137, PolyPhen.Hsapiens.dbSNP131, snpStats, ggplot2, BiocStyle
# SystemRequirements: GNU make
requirements:
  host:
    - 'bioconductor-annotationdbi >=1.60.0,<1.61.0'
    - 'bioconductor-biobase >=2.58.0,<2.59.0'
    - 'bioconductor-biocgenerics >=0.44.0,<0.45.0'
    - 'bioconductor-biostrings >=2.66.0,<2.67.0'
    - 'bioconductor-bsgenome >=1.66.0,<1.67.0'
    - 'bioconductor-genomeinfodb >=1.34.0,<1.35.0'
    - 'bioconductor-genomicfeatures >=1.50.0,<1.51.0'
    - 'bioconductor-genomicranges >=1.50.0,<1.51.0'
    - 'bioconductor-iranges >=2.32.0,<2.33.0'
    - 'bioconductor-matrixgenerics >=1.10.0,<1.11.0'
    - 'bioconductor-rhtslib >=2.0.0,<2.1.0'
    - 'bioconductor-rsamtools >=2.14.0,<2.15.0'
    - 'bioconductor-rtracklayer >=1.58.0,<1.59.0'
    - 'bioconductor-s4vectors >=0.36.0,<0.37.0'
    - 'bioconductor-summarizedexperiment >=1.28.0,<1.29.0'
    - 'bioconductor-xvector >=0.38.0,<0.39.0'
    - 'bioconductor-zlibbioc >=1.44.0,<1.45.0'
    - r-base
    - r-dbi
    - libblas
    - liblapack
  run:
    - 'bioconductor-annotationdbi >=1.60.0,<1.61.0'
    - 'bioconductor-biobase >=2.58.0,<2.59.0'
    - 'bioconductor-biocgenerics >=0.44.0,<0.45.0'
    - 'bioconductor-biostrings >=2.66.0,<2.67.0'
    - 'bioconductor-bsgenome >=1.66.0,<1.67.0'
    - 'bioconductor-genomeinfodb >=1.34.0,<1.35.0'
    - 'bioconductor-genomicfeatures >=1.50.0,<1.51.0'
    - 'bioconductor-genomicranges >=1.50.0,<1.51.0'
    - 'bioconductor-iranges >=2.32.0,<2.33.0'
    - 'bioconductor-matrixgenerics >=1.10.0,<1.11.0'
    - 'bioconductor-rhtslib >=2.0.0,<2.1.0'
    - 'bioconductor-rsamtools >=2.14.0,<2.15.0'
    - 'bioconductor-rtracklayer >=1.58.0,<1.59.0'
    - 'bioconductor-s4vectors >=0.36.0,<0.37.0'
    - 'bioconductor-summarizedexperiment >=1.28.0,<1.29.0'
    - 'bioconductor-xvector >=0.38.0,<0.39.0'
    - 'bioconductor-zlibbioc >=1.44.0,<1.45.0'
    - r-base
    - r-dbi
  build:
    - {{ compiler('c') }}
    - make
test:
  commands:
    - '$R -e "library(''{{ name }}'')"'
about:
  home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
  license: Artistic-2.0
  summary: 'Annotation of Genetic Variants'
  description: 'Annotate variants, compute amino acid coding changes, predict coding outcomes.'
extra:
  identifiers:
    - biotools:variantannotation
  parent_recipe:
    name: bioconductor-variantannotation
    path: recipes/bioconductor-variantannotation
    version: 1.26.1