# This file created by conda-build 3.24.0
# meta.yaml template originally from:
# /opt/recipe, last modified Thu May 18 15:28:56 2023
# ------------------------------------------------

package:
  name: bioconductor-variantannotation
  version: 1.44.0
source:
  md5: 1eb1ca84bbc69638b2842176d03b01a1
  url:
    - https://bioarchive.galaxyproject.org/VariantAnnotation_1.44.0.tar.gz
    - https://bioconductor.org/packages/3.16/bioc/src/contrib/Archive/VariantAnnotation/VariantAnnotation_1.44.0.tar.gz
    - https://bioconductor.org/packages/3.16/bioc/src/contrib/VariantAnnotation_1.44.0.tar.gz
    - https://depot.galaxyproject.org/software/bioconductor-variantannotation/bioconductor-variantannotation_1.44.0_src_all.tar.gz
build:
  number: '1'
  rpaths:
    - lib/
    - lib/R/lib/
  string: r42ha9d7317_1
requirements:
  build:
    - _libgcc_mutex 0.1 conda_forge
    - _openmp_mutex 4.5 2_gnu
    - binutils_impl_linux-64 2.39 he00db2b_1
    - binutils_linux-64 2.39 h5fc0e48_13
    - gcc_impl_linux-64 12.2.0 hcc96c02_19
    - gcc_linux-64 12.2.0 h4798a0e_13
    - kernel-headers_linux-64 2.6.32 he073ed8_15
    - ld_impl_linux-64 2.39 hcc3a1bd_1
    - libgcc-devel_linux-64 12.2.0 h3b97bd3_19
    - libgcc-ng 12.2.0 h65d4601_19
    - libgomp 12.2.0 h65d4601_19
    - libsanitizer 12.2.0 h46fd767_19
    - libstdcxx-ng 12.2.0 h46fd767_19
    - make 4.3 hd18ef5c_1
    - sysroot_linux-64 2.12 he073ed8_15
  host:
    - _libgcc_mutex 0.1 conda_forge
    - _openmp_mutex 4.5 2_gnu
    - _r-mutex 1.0.1 anacondar_1
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    - bioconductor-biobase 2.58.0 r42ha9d7317_1
    - bioconductor-biocfilecache 2.6.0 r42hdfd78af_0
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    - bioconductor-biocparallel 1.32.5 r42hf17093f_1
    - bioconductor-biomart 2.54.0 r42hdfd78af_0
    - bioconductor-biostrings 2.66.0 r42hc0cfd56_0
    - bioconductor-bsgenome 1.66.3 r42hdfd78af_0
    - bioconductor-data-packages 20230420 hdfd78af_0
    - bioconductor-delayedarray 0.24.0 r42hc0cfd56_0
    - bioconductor-genomeinfodb 1.34.9 r42hdfd78af_0
    - bioconductor-genomeinfodbdata 1.2.9 r42hdfd78af_0
    - bioconductor-genomicalignments 1.34.0 r42hc0cfd56_0
    - bioconductor-genomicfeatures 1.50.2 r42hdfd78af_0
    - bioconductor-genomicranges 1.50.0 r42hc0cfd56_0
    - bioconductor-iranges 2.32.0 r42ha9d7317_1
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    - bioconductor-matrixgenerics 1.10.0 r42hdfd78af_0
    - bioconductor-rhtslib 2.0.0 r42ha9d7317_1
    - bioconductor-rsamtools 2.14.0 r42hc247a5b_0
    - bioconductor-rtracklayer 1.58.0 r42h171f361_1
    - bioconductor-s4vectors 0.36.0 r42ha9d7317_1
    - bioconductor-summarizedexperiment 1.28.0 r42hdfd78af_0
    - bioconductor-xvector 0.38.0 r42hc0cfd56_0
    - bioconductor-zlibbioc 1.44.0 r42ha9d7317_2
    - bwidget 1.9.14 ha770c72_1
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    - font-ttf-ubuntu 0.83 hab24e00_0
    - fontconfig 2.14.2 h14ed4e7_0
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    - fribidi 1.0.10 h36c2ea0_0
    - gcc_impl_linux-64 12.2.0 hcc96c02_19
    - gettext 0.21.1 h27087fc_0
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    - graphite2 1.3.13 h58526e2_1001
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    - lerc 4.0.0 h27087fc_0
    - libblas 3.9.0 5_h92ddd45_netlib
    - libcblas 3.9.0 5_h92ddd45_netlib
    - libcurl 7.87.0 h6312ad2_0
    - libdeflate 1.17 h0b41bf4_0
    - libedit 3.1.20191231 he28a2e2_2
    - libev 4.33 h516909a_1
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    - libffi 3.4.2 h7f98852_5
    - libgcc-devel_linux-64 12.2.0 h3b97bd3_19
    - libgcc-ng 12.2.0 h65d4601_19
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    - libgfortran5 12.2.0 h337968e_19
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    - ncurses 6.3 h27087fc_1
    - oniguruma 6.9.8 h166bdaf_0
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    - pango 1.50.14 hd33c08f_0
    - pcre2 10.40 hc3806b6_0
    - pip 23.1.2 pyhd8ed1ab_0
    - pixman 0.40.0 h36c2ea0_0
    - pthread-stubs 0.4 h36c2ea0_1001
    - python 3.11.0 h10a6764_1_cpython
    - python_abi 3.11 3_cp311
    - pyyaml 6.0 py311hd4cff14_5
    - r-askpass 1.1 r42h06615bd_3
    - r-assertthat 0.2.1 r42hc72bb7e_3
    - r-base 4.2.2 ha7d60f8_3
    - r-bh 1.81.0_1 r42hc72bb7e_0
    - r-bit 4.0.5 r42h06615bd_0
    - r-bit64 4.0.5 r42h06615bd_1
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    - r-dbi 1.1.3 r42hc72bb7e_1
    - r-dbplyr 2.3.2 r42hc72bb7e_0
    - r-digest 0.6.31 r42h38f115c_0
    - r-dplyr 1.1.2 r42ha503ecb_0
    - r-ellipsis 0.3.2 r42h06615bd_1
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    - r-formatr 1.14 r42hc72bb7e_0
    - r-futile.logger 1.4.3 r42hc72bb7e_1004
    - r-futile.options 1.0.1 r42hc72bb7e_1003
    - r-generics 0.1.3 r42hc72bb7e_1
    - r-glue 1.6.2 r42h06615bd_1
    - r-hms 1.1.3 r42hc72bb7e_0
    - r-httr 1.4.6 r42hc72bb7e_0
    - r-jsonlite 1.8.4 r42h133d619_0
    - r-lambda.r 1.2.4 r42hc72bb7e_2
    - r-lattice 0.21_8 r42h133d619_0
    - r-lifecycle 1.0.3 r42hc72bb7e_1
    - r-magrittr 2.0.3 r42h06615bd_1
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    - r-sys 3.4.1 r42h06615bd_0
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    - r-withr 2.5.0 r42hc72bb7e_1
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    - r-xml2 1.3.3 r42h044e5c7_2
    - r-yaml 2.3.7 r42h133d619_0
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    - sed 4.8 he412f7d_0
    - setuptools 67.7.2 pyhd8ed1ab_0
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    - tk 8.6.12 h27826a3_0
    - tktable 2.10 hb7b940f_3
    - toml 0.10.2 pyhd8ed1ab_0
    - tomlkit 0.11.8 pyha770c72_0
    - tzdata 2023c h71feb2d_0
    - wheel 0.40.0 pyhd8ed1ab_0
    - xmltodict 0.13.0 pyhd8ed1ab_0
    - xorg-kbproto 1.0.7 h7f98852_1002
    - xorg-libice 1.0.10 h7f98852_0
    - xorg-libsm 1.2.3 hd9c2040_1000
    - xorg-libx11 1.8.4 h0b41bf4_0
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    - yq 3.2.2 pyhd8ed1ab_0
    - zlib 1.2.13 h166bdaf_4
    - zstd 1.5.2 h3eb15da_6
  run:
    - bioconductor-annotationdbi >=1.60.0,<1.61.0
    - bioconductor-biobase >=2.58.0,<2.59.0
    - bioconductor-biocgenerics >=0.44.0,<0.45.0
    - bioconductor-biostrings >=2.66.0,<2.67.0
    - bioconductor-bsgenome >=1.66.0,<1.67.0
    - bioconductor-genomeinfodb >=1.34.0,<1.35.0
    - bioconductor-genomicfeatures >=1.50.0,<1.51.0
    - bioconductor-genomicranges >=1.50.0,<1.51.0
    - bioconductor-iranges >=2.32.0,<2.33.0
    - bioconductor-matrixgenerics >=1.10.0,<1.11.0
    - bioconductor-rhtslib >=2.0.0,<2.1.0
    - bioconductor-rsamtools >=2.14.0,<2.15.0
    - bioconductor-rtracklayer >=1.58.0,<1.59.0
    - bioconductor-s4vectors >=0.36.0,<0.37.0
    - bioconductor-summarizedexperiment >=1.28.0,<1.29.0
    - bioconductor-xvector >=0.38.0,<0.39.0
    - bioconductor-zlibbioc >=1.44.0,<1.45.0
    - libblas >=3.9.0,<4.0a0
    - libgcc-ng >=12
    - liblapack >=3.9.0,<4.0a0
    - r-base >=4.2,<4.3.0a0
    - r-dbi
test:
  commands:
    - $R -e "library('VariantAnnotation')"
about:
  description: Annotate variants, compute amino acid coding changes, predict coding
    outcomes.
  home: https://bioconductor.org/packages/3.16/bioc/html/VariantAnnotation.html
  license: Artistic-2.0
  summary: Annotation of Genetic Variants
extra:
  copy_test_source_files: true
  final: true
  identifiers:
    - biotools:variantannotation
