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lib/R/library/VariantAnnotation/DESCRIPTION
lib/R/library/VariantAnnotation/INDEX
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lib/R/library/VariantAnnotation/Meta/features.rds
lib/R/library/VariantAnnotation/Meta/hsearch.rds
lib/R/library/VariantAnnotation/Meta/links.rds
lib/R/library/VariantAnnotation/Meta/nsInfo.rds
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lib/R/library/VariantAnnotation/Meta/vignette.rds
lib/R/library/VariantAnnotation/NAMESPACE
lib/R/library/VariantAnnotation/NEWS
lib/R/library/VariantAnnotation/R/VariantAnnotation
lib/R/library/VariantAnnotation/R/VariantAnnotation.rdb
lib/R/library/VariantAnnotation/R/VariantAnnotation.rdx
lib/R/library/VariantAnnotation/doc/VariantAnnotation.R
lib/R/library/VariantAnnotation/doc/VariantAnnotation.Rnw
lib/R/library/VariantAnnotation/doc/VariantAnnotation.pdf
lib/R/library/VariantAnnotation/doc/filterVcf.R
lib/R/library/VariantAnnotation/doc/filterVcf.Rnw
lib/R/library/VariantAnnotation/doc/filterVcf.pdf
lib/R/library/VariantAnnotation/doc/index.html
lib/R/library/VariantAnnotation/extdata/chr22.vcf.gz
lib/R/library/VariantAnnotation/extdata/chr22.vcf.gz.tbi
lib/R/library/VariantAnnotation/extdata/chr7-sub.vcf.gz
lib/R/library/VariantAnnotation/extdata/chr7-sub.vcf.gz.tbi
lib/R/library/VariantAnnotation/extdata/ex2.vcf
lib/R/library/VariantAnnotation/extdata/gl_chr1.vcf
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lib/R/library/VariantAnnotation/extdata/hapmap_exome_chr22.vcf.gz.tbi
lib/R/library/VariantAnnotation/extdata/structural.vcf
lib/R/library/VariantAnnotation/help/AnIndex
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lib/R/library/VariantAnnotation/help/VariantAnnotation.rdx
lib/R/library/VariantAnnotation/help/aliases.rds
lib/R/library/VariantAnnotation/help/paths.rds
lib/R/library/VariantAnnotation/html/00Index.html
lib/R/library/VariantAnnotation/html/R.css
lib/R/library/VariantAnnotation/libs/VariantAnnotation.so
lib/R/library/VariantAnnotation/scripts/test_Rplinkseq.R
lib/R/library/VariantAnnotation/unitTests/cases/FORMAT_header_no_SAMPLEs.vcf
lib/R/library/VariantAnnotation/unitTests/cases/VarScan_header.vcf
lib/R/library/VariantAnnotation/unitTests/cases/banded_gvcf.vcf
lib/R/library/VariantAnnotation/unitTests/cases/buffer_realloc.vcf
lib/R/library/VariantAnnotation/unitTests/cases/ex1-seq1-90.vcf
lib/R/library/VariantAnnotation/unitTests/cases/expand.vcf
lib/R/library/VariantAnnotation/unitTests/cases/fewer-FORMAT-than-GENO.vcf
lib/R/library/VariantAnnotation/unitTests/cases/meta_header.vcf
lib/R/library/VariantAnnotation/unitTests/cases/missing-FORMAT-metadata-elt.vcf
lib/R/library/VariantAnnotation/unitTests/cases/mixedStructural.vcf
lib/R/library/VariantAnnotation/unitTests/cases/multiple_INFO_fields.vcf
lib/R/library/VariantAnnotation/unitTests/cases/negative_FORMAT_Number.vcf
lib/R/library/VariantAnnotation/unitTests/cases/no_FORMAT_column.vcf
lib/R/library/VariantAnnotation/unitTests/cases/no_GENO_row.vcf
lib/R/library/VariantAnnotation/unitTests/cases/no_INFO_header.vcf
lib/R/library/VariantAnnotation/unitTests/cases/unspecified_INFO_FORMAT_fields.vcf
lib/R/library/VariantAnnotation/unitTests/test_SIFTandPolyPhen.R
lib/R/library/VariantAnnotation/unitTests/test_ScanVcfParam-class.R
lib/R/library/VariantAnnotation/unitTests/test_VCF-class.R
lib/R/library/VariantAnnotation/unitTests/test_VRanges-class.R
lib/R/library/VariantAnnotation/unitTests/test_expand-methods.R
lib/R/library/VariantAnnotation/unitTests/test_filterVcf.R
lib/R/library/VariantAnnotation/unitTests/test_genotypeToSnpMatrix.R
lib/R/library/VariantAnnotation/unitTests/test_isSNV.R
lib/R/library/VariantAnnotation/unitTests/test_locateVariants-methods.R
lib/R/library/VariantAnnotation/unitTests/test_predictCoding-methods.R
lib/R/library/VariantAnnotation/unitTests/test_readVcf-methods.R
lib/R/library/VariantAnnotation/unitTests/test_scanVcf.R
lib/R/library/VariantAnnotation/unitTests/test_snpSummary.R
lib/R/library/VariantAnnotation/unitTests/test_summarizeVariants-methods.R
lib/R/library/VariantAnnotation/unitTests/test_vcfFields.R
lib/R/library/VariantAnnotation/unitTests/test_writeVcf-methods.R