# This file created by conda-build 3.24.0
# meta.yaml template originally from:
# /opt/recipe, last modified Mon May 22 20:12:17 2023
# ------------------------------------------------

package:
  name: bioconductor-rsamtools
  version: 2.14.0
source:
  md5: 36dc928eb8aebb85ad4f2d0098c1daf6
  url:
    - https://bioarchive.galaxyproject.org/Rsamtools_2.14.0.tar.gz
    - https://bioconductor.org/packages/3.16/bioc/src/contrib/Archive/Rsamtools/Rsamtools_2.14.0.tar.gz
    - https://bioconductor.org/packages/3.16/bioc/src/contrib/Rsamtools_2.14.0.tar.gz
    - https://depot.galaxyproject.org/software/bioconductor-rsamtools/bioconductor-rsamtools_2.14.0_src_all.tar.gz
build:
  number: '1'
  rpaths:
    - lib/
    - lib/R/lib/
  string: r42hf17093f_1
requirements:
  build:
    - _libgcc_mutex 0.1 conda_forge
    - _openmp_mutex 4.5 2_gnu
    - binutils_impl_linux-64 2.39 he00db2b_1
    - binutils_linux-64 2.39 h5fc0e48_13
    - gcc_impl_linux-64 12.2.0 hcc96c02_19
    - gcc_linux-64 12.2.0 h4798a0e_13
    - gxx_impl_linux-64 12.2.0 hcc96c02_19
    - gxx_linux-64 12.2.0 hb41e900_13
    - kernel-headers_linux-64 2.6.32 he073ed8_15
    - ld_impl_linux-64 2.39 hcc3a1bd_1
    - libgcc-devel_linux-64 12.2.0 h3b97bd3_19
    - libgcc-ng 12.2.0 h65d4601_19
    - libgomp 12.2.0 h65d4601_19
    - libsanitizer 12.2.0 h46fd767_19
    - libstdcxx-devel_linux-64 12.2.0 h3b97bd3_19
    - libstdcxx-ng 12.2.0 h46fd767_19
    - make 4.3 hd18ef5c_1
    - sysroot_linux-64 2.12 he073ed8_15
  host:
    - _libgcc_mutex 0.1 conda_forge
    - _openmp_mutex 4.5 2_gnu
    - _r-mutex 1.0.1 anacondar_1
    - argcomplete 3.0.8 pyhd8ed1ab_0
    - binutils_impl_linux-64 2.40 hf600244_0
    - bioconductor-biocgenerics 0.44.0 r42hdfd78af_0
    - bioconductor-biocparallel 1.32.5 r42hf17093f_1
    - bioconductor-biostrings 2.66.0 r42ha9d7317_1
    - bioconductor-data-packages 20230420 hdfd78af_0
    - bioconductor-genomeinfodb 1.34.9 r42hdfd78af_0
    - bioconductor-genomeinfodbdata 1.2.9 r42hdfd78af_0
    - bioconductor-genomicranges 1.50.0 r42ha9d7317_1
    - bioconductor-iranges 2.32.0 r42ha9d7317_1
    - bioconductor-rhtslib 2.0.0 r42ha9d7317_1
    - bioconductor-s4vectors 0.36.0 r42ha9d7317_1
    - bioconductor-xvector 0.38.0 r42ha9d7317_1
    - bioconductor-zlibbioc 1.44.0 r42ha9d7317_2
    - bwidget 1.9.14 ha770c72_1
    - bzip2 1.0.8 h7f98852_4
    - c-ares 1.19.1 hd590300_0
    - ca-certificates 2023.5.7 hbcca054_0
    - cairo 1.16.0 hbbf8b49_1016
    - curl 8.1.0 h409715c_0
    - expat 2.5.0 hcb278e6_1
    - font-ttf-dejavu-sans-mono 2.37 hab24e00_0
    - font-ttf-inconsolata 3.000 h77eed37_0
    - font-ttf-source-code-pro 2.038 h77eed37_0
    - font-ttf-ubuntu 0.83 hab24e00_0
    - fontconfig 2.14.2 h14ed4e7_0
    - fonts-conda-ecosystem 1 0
    - fonts-conda-forge 1 0
    - freetype 2.12.1 hca18f0e_1
    - fribidi 1.0.10 h36c2ea0_0
    - gcc_impl_linux-64 12.2.0 hcc96c02_19
    - gettext 0.21.1 h27087fc_0
    - gfortran_impl_linux-64 12.2.0 h55be85b_19
    - graphite2 1.3.13 h58526e2_1001
    - gsl 2.7 he838d99_0
    - gxx_impl_linux-64 12.2.0 hcc96c02_19
    - harfbuzz 7.3.0 hdb3a94d_0
    - icu 72.1 hcb278e6_0
    - jq 1.6 h36c2ea0_1000
    - kernel-headers_linux-64 2.6.32 he073ed8_15
    - keyutils 1.6.1 h166bdaf_0
    - krb5 1.20.1 h81ceb04_0
    - ld_impl_linux-64 2.40 h41732ed_0
    - lerc 4.0.0 h27087fc_0
    - libblas 3.9.0 5_h92ddd45_netlib
    - libcblas 3.9.0 5_h92ddd45_netlib
    - libcurl 8.1.0 h409715c_0
    - libdeflate 1.18 h0b41bf4_0
    - libedit 3.1.20191231 he28a2e2_2
    - libev 4.33 h516909a_1
    - libexpat 2.5.0 hcb278e6_1
    - libffi 3.4.2 h7f98852_5
    - libgcc-devel_linux-64 12.2.0 h3b97bd3_19
    - libgcc-ng 12.2.0 h65d4601_19
    - libgfortran-ng 12.2.0 h69a702a_19
    - libgfortran5 12.2.0 h337968e_19
    - libglib 2.76.2 hebfc3b9_0
    - libgomp 12.2.0 h65d4601_19
    - libiconv 1.17 h166bdaf_0
    - libjpeg-turbo 2.1.5.1 h0b41bf4_0
    - liblapack 3.9.0 5_h92ddd45_netlib
    - libnghttp2 1.52.0 h61bc06f_0
    - libnsl 2.0.0 h7f98852_0
    - libpng 1.6.39 h753d276_0
    - libsanitizer 12.2.0 h46fd767_19
    - libsqlite 3.42.0 h2797004_0
    - libssh2 1.10.0 hf14f497_3
    - libstdcxx-devel_linux-64 12.2.0 h3b97bd3_19
    - libstdcxx-ng 12.2.0 h46fd767_19
    - libtiff 4.5.0 ha587672_6
    - libuuid 2.38.1 h0b41bf4_0
    - libwebp-base 1.3.0 h0b41bf4_0
    - libxcb 1.15 h0b41bf4_0
    - libxml2 2.11.4 h0d562d8_0
    - libzlib 1.2.13 h166bdaf_4
    - make 4.3 hd18ef5c_1
    - ncurses 6.3 h27087fc_1
    - oniguruma 6.9.8 h166bdaf_0
    - openssl 3.1.0 hd590300_3
    - pango 1.50.14 heaa33ce_1
    - pcre2 10.40 hc3806b6_0
    - pip 23.1.2 pyhd8ed1ab_0
    - pixman 0.40.0 h36c2ea0_0
    - pthread-stubs 0.4 h36c2ea0_1001
    - python 3.11.3 h2755cc3_0_cpython
    - python_abi 3.11 3_cp311
    - pyyaml 6.0 py311hd4cff14_5
    - r-base 4.2.3 hfabd6f2_3
    - r-bh 1.81.0_1 r42hc72bb7e_0
    - r-bitops 1.0_7 r42h06615bd_1
    - r-codetools 0.2_19 r42hc72bb7e_0
    - r-cpp11 0.4.3 r42hc72bb7e_0
    - r-crayon 1.5.2 r42hc72bb7e_1
    - r-formatr 1.14 r42hc72bb7e_0
    - r-futile.logger 1.4.3 r42hc72bb7e_1004
    - r-futile.options 1.0.1 r42hc72bb7e_1003
    - r-lambda.r 1.2.4 r42hc72bb7e_2
    - r-rcurl 1.98_1.12 r42hf9611b0_1
    - r-snow 0.4_4 r42hc72bb7e_1
    - readline 8.2 h8228510_1
    - sed 4.8 he412f7d_0
    - setuptools 67.7.2 pyhd8ed1ab_0
    - sysroot_linux-64 2.12 he073ed8_15
    - tk 8.6.12 h27826a3_0
    - tktable 2.10 hb7b940f_3
    - toml 0.10.2 pyhd8ed1ab_0
    - tomlkit 0.11.8 pyha770c72_0
    - tzdata 2023c h71feb2d_0
    - wheel 0.40.0 pyhd8ed1ab_0
    - xmltodict 0.13.0 pyhd8ed1ab_0
    - xorg-kbproto 1.0.7 h7f98852_1002
    - xorg-libice 1.0.10 h7f98852_0
    - xorg-libsm 1.2.3 hd9c2040_1000
    - xorg-libx11 1.8.4 h8ee46fc_1
    - xorg-libxau 1.0.11 hd590300_0
    - xorg-libxdmcp 1.1.3 h7f98852_0
    - xorg-libxext 1.3.4 h0b41bf4_2
    - xorg-libxrender 0.9.10 h7f98852_1003
    - xorg-libxt 1.2.1 h7f98852_2
    - xorg-renderproto 0.11.1 h7f98852_1002
    - xorg-xextproto 7.3.0 h0b41bf4_1003
    - xorg-xproto 7.0.31 h7f98852_1007
    - xz 5.2.6 h166bdaf_0
    - yaml 0.2.5 h7f98852_2
    - yq 3.2.2 pyhd8ed1ab_0
    - zlib 1.2.13 h166bdaf_4
    - zstd 1.5.2 h3eb15da_6
  run:
    - bioconductor-biocgenerics >=0.44.0,<0.45.0
    - bioconductor-biocparallel >=1.32.0,<1.33.0
    - bioconductor-biostrings >=2.66.0,<2.67.0
    - bioconductor-genomeinfodb >=1.34.0,<1.35.0
    - bioconductor-genomicranges >=1.50.0,<1.51.0
    - bioconductor-iranges >=2.32.0,<2.33.0
    - bioconductor-rhtslib >=2.0.0,<2.1.0
    - bioconductor-s4vectors >=0.36.0,<0.37.0
    - bioconductor-xvector >=0.38.0,<0.39.0
    - bioconductor-zlibbioc >=1.44.0,<1.45.0
    - libblas >=3.9.0,<4.0a0
    - libgcc-ng >=12
    - liblapack >=3.9.0,<4.0a0
    - libstdcxx-ng >=12
    - r-base >=4.2,<4.3.0a0
    - r-bitops
test:
  commands:
    - $R -e "library('Rsamtools')"
about:
  description: This package provides an interface to the 'samtools', 'bcftools', and
    'tabix' utilities for manipulating SAM (Sequence Alignment / Map), FASTA, binary
    variant call (BCF) and compressed indexed tab-delimited (tabix) files.
  home: https://bioconductor.org/packages/3.16/bioc/html/Rsamtools.html
  license: Artistic-2.0 | file LICENSE
  license_file: LICENSE
  summary: Binary alignment (BAM), FASTA, variant call (BCF), and tabix file import
extra:
  copy_test_source_files: true
  final: true
  identifiers:
    - biotools:rsamtools
    - doi:10.1038/nmeth.3252
