{% set version = "1.42.0" %}
{% set name = "phyloseq" %}
{% set bioc = "3.16" %}

package:
  name: 'bioconductor-{{ name|lower }}'
  version: '{{ version }}'
source:
  url:
    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
  md5: edf40c9718a0242aec1731026fa9c610
build:
  number: 0
  rpaths:
    - lib/R/lib/
    - lib/
  noarch: generic
# Suggests: BiocStyle (>= 2.4), DESeq2 (>= 1.16.1), genefilter (>= 1.58), knitr (>= 1.16), magrittr (>= 1.5), metagenomeSeq (>= 1.14), rmarkdown (>= 1.6), testthat (>= 1.0.2)
requirements:
  host:
    - 'bioconductor-biobase >=2.58.0,<2.59.0'
    - 'bioconductor-biocgenerics >=0.44.0,<0.45.0'
    - 'bioconductor-biomformat >=1.26.0,<1.27.0'
    - 'bioconductor-biostrings >=2.66.0,<2.67.0'
    - 'bioconductor-multtest >=2.54.0,<2.55.0'
    - 'r-ade4 >=1.7-4'
    - 'r-ape >=5.0'
    - r-base
    - 'r-cluster >=2.0.4'
    - 'r-data.table >=1.10.4'
    - 'r-foreach >=1.4.3'
    - 'r-ggplot2 >=2.1.0'
    - 'r-igraph >=1.0.1'
    - 'r-plyr >=1.8.3'
    - 'r-reshape2 >=1.4.1'
    - 'r-scales >=0.4.0'
    - 'r-vegan >=2.5'
  run:
    - 'bioconductor-biobase >=2.58.0,<2.59.0'
    - 'bioconductor-biocgenerics >=0.44.0,<0.45.0'
    - 'bioconductor-biomformat >=1.26.0,<1.27.0'
    - 'bioconductor-biostrings >=2.66.0,<2.67.0'
    - 'bioconductor-multtest >=2.54.0,<2.55.0'
    - 'r-ade4 >=1.7-4'
    - 'r-ape >=5.0'
    - r-base
    - 'r-cluster >=2.0.4'
    - 'r-data.table >=1.10.4'
    - 'r-foreach >=1.4.3'
    - 'r-ggplot2 >=2.1.0'
    - 'r-igraph >=1.0.1'
    - 'r-plyr >=1.8.3'
    - 'r-reshape2 >=1.4.1'
    - 'r-scales >=0.4.0'
    - 'r-vegan >=2.5'
test:
  commands:
    - '$R -e "library(''{{ name }}'')"'
about:
  home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
  license: AGPL-3
  summary: 'Handling and analysis of high-throughput microbiome census data'
  description: 'phyloseq provides a set of classes and tools to facilitate the import, storage, analysis, and graphical display of microbiome census data.'
  license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/AGPL-3'
extra:
  identifiers:
    - biotools:phyloseq
  parent_recipe:
    name: bioconductor-phyloseq
    path: recipes/bioconductor-phyloseq
    version: 1.24.2