# This file created by conda-build 3.24.0
# meta.yaml template originally from:
# /opt/recipe, last modified Mon May 15 05:57:51 2023
# ------------------------------------------------

package:
  name: bcftools
  version: '1.17'
source:
  sha256: 01f75d8e701d85b2c759172412009cc04f29b61616ace2fa75116123de4596cc
  url: https://github.com/samtools/bcftools/releases/download/1.17/bcftools-1.17.tar.bz2
build:
  number: '1'
  string: h3cc50cf_1
requirements:
  build:
    - _libgcc_mutex 0.1 conda_forge
    - _openmp_mutex 4.5 2_gnu
    - binutils_impl_linux-64 2.39 he00db2b_1
    - binutils_linux-64 2.39 h5fc0e48_13
    - gcc_impl_linux-64 12.2.0 hcc96c02_19
    - gcc_linux-64 12.2.0 h4798a0e_13
    - kernel-headers_linux-64 2.6.32 he073ed8_15
    - ld_impl_linux-64 2.39 hcc3a1bd_1
    - libgcc-devel_linux-64 12.2.0 h3b97bd3_19
    - libgcc-ng 12.2.0 h65d4601_19
    - libgomp 12.2.0 h65d4601_19
    - libsanitizer 12.2.0 h46fd767_19
    - libstdcxx-ng 12.2.0 h46fd767_19
    - make 4.3 hd18ef5c_1
    - sysroot_linux-64 2.12 he073ed8_15
  host:
    - _libgcc_mutex 0.1 conda_forge
    - _openmp_mutex 4.5 2_gnu
    - bzip2 1.0.8 h7f98852_4
    - c-ares 1.18.1 h7f98852_0
    - ca-certificates 2023.5.7 hbcca054_0
    - gsl 2.7 he838d99_0
    - htslib 1.17 h6bc39ce_1
    - keyutils 1.6.1 h166bdaf_0
    - krb5 1.20.1 hf9c8cef_0
    - libblas 3.9.0 16_linux64_openblas
    - libcblas 3.9.0 16_linux64_openblas
    - libcurl 7.87.0 h6312ad2_0
    - libdeflate 1.13 h166bdaf_0
    - libedit 3.1.20191231 he28a2e2_2
    - libev 4.33 h516909a_1
    - libgcc-ng 12.2.0 h65d4601_19
    - libgfortran-ng 12.2.0 h69a702a_19
    - libgfortran5 12.2.0 h337968e_19
    - libgomp 12.2.0 h65d4601_19
    - libnghttp2 1.51.0 hdcd2b5c_0
    - libopenblas 0.3.21 pthreads_h78a6416_3
    - libssh2 1.10.0 haa6b8db_3
    - libstdcxx-ng 12.2.0 h46fd767_19
    - libzlib 1.2.13 h166bdaf_4
    - ncurses 6.3 h27087fc_1
    - openssl 1.1.1t h0b41bf4_0
    - xz 5.2.6 h166bdaf_0
    - zlib 1.2.13 h166bdaf_4
  run:
    - gsl >=2.7,<2.8.0a0
    - htslib >=1.17,<1.18.0a0
    - htslib >=1.17,<1.18.0a0
    - libgcc-ng >=12
    - libzlib >=1.2.13,<1.3.0a0
    - perl
    - zlib
test:
  commands:
    - bcftools -h
    - bcftools --version
    - bcftools plugin -lv
    - bcftools -h | grep polysomy
    - vcfutils.pl 2>&1 | grep vcfutils
about:
  home: https://github.com/samtools/bcftools
  license: GPL
  license_file: LICENSE
  summary: BCFtools is a set of utilities that manipulate variant calls in the Variant
    Call Format (VCF) and its binary counterpart BCF. All commands work transparently
    with both VCFs and BCFs, both uncompressed and BGZF-compressed.  Most commands
    accept VCF, bgzipped VCF and BCF with filetype detected automatically even when
    streaming from a pipe. Indexed VCF and BCF will work in all situations. Un-indexed
    VCF and BCF and streams will work in most, but not all situations.
extra:
  copy_test_source_files: true
  final: true
  identifiers:
    - biotools:bcftools
    - doi:10.1093/bioinformatics/btp352
    - usegalaxy-eu:bcftools_merge
